Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-430 |
| Cow position: | chr13:15450109-15449695 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 103 |
| Conread position: | 1-447 |
| Cow position: | chr13:11797708-11797238 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 154 |
| Conread position: | 4-124 |
| Cow position: | chr13:26845317-26845435 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 99 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 51, 15 |
| Conread position: | 4-257 |
| Cow position: | chr13:15923364-15923100 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-338 |
| Cow position: | chr13:34049759-34050086 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 4-396 |
| Cow position: | chr13:25692694-25693092 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-416 |
| Cow position: | chr13:15543559-15543978 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 54 |
| Conread position: | 4-416 |
| Cow position: | chr13:37835307-37834889 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 4-435 |
| Cow position: | chr13:678767-679205 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 5-177 |
| Cow position: | chr13:17998576-17998755 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-177 |
| Cow position: | chr13:47228981-47228801 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-369 |
| Cow position: | chr13:34909004-34908648 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-371 |
| Cow position: | chr13:28860182-28860557 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-435 |
| Cow position: | chr13:6358141-6358581 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 143 |
| Conread position: | 5-435 |
| Cow position: | chr13:17309488-17309920 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 112 |
| Conread position: | 5-444 |
| Cow position: | chr13:31507934-31508373 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 5-445 |
| Cow position: | chr13:13325947-13326392 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-445 |
| Cow position: | chr13:34938466-34938904 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 15 |
| Conread position: | 5-447 |
| Cow position: | chr13:5500981-5500530 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-447 |
| Cow position: | chr13:31732871-31732427 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-447 |
| Cow position: | chr13:42090670-42090224 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 5-447 |
| Cow position: | chr13:43590349-43590783 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 66 |
| Conread position: | 5-449 |
| Cow position: | chr13:34030637-34031068 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 108 |
| Conread position: | 5-449 |
| Cow position: | chr13:48358660-48359097 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 74 |
| Conread position: | 6-300 |
| Cow position: | chr13:8796786-8796494 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 6-431 |
| Cow position: | chr13:44652796-44652398 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 6-447 |
| Cow position: | chr13:32984323-32983875 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 33 |
| Conread position: | 7-247 |
| Cow position: | chr13:15519500-15519266 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-263 |
| Cow position: | chr13:23001988-23001727 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 203 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 7-412 |
| Cow position: | chr13:4484810-4485223 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 7-441 |
| Cow position: | chr13:32924110-32923671 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr13:4942404-4942856 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 7-449 |
| Cow position: | chr13:9045787-9046219 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 7-449 |
| Cow position: | chr13:14402076-14401637 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr13:31611290-31610846 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 80 |
| Conread position: | 7-449 |
| Cow position: | chr13:35758303-35758751 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 7-450 |
| Cow position: | chr13:34041317-34040862 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 9-282 |
| Cow position: | chr13:30654368-30654083 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 9-435 |
| Cow position: | chr13:50110475-50110910 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 10-373 |
| Cow position: | chr13:34764800-34764446 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 11-449 |
| Cow position: | chr13:6667107-6666668 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 28 |
| Conread position: | 17-300 |
| Cow position: | chr13:5624953-5624666 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 23 |
| Conread position: | 17-348 |
| Cow position: | chr13:30239351-30239697 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 124 |
| Conread position: | 17-435 |
| Cow position: | chr13:42217649-42217225 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 17-435 |
| Cow position: | chr13:60468457-60468884 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 132 |
| Conread position: | 17-449 |
| Cow position: | chr13:13900899-13901337 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 18-391 |
| Cow position: | chr13:21720920-21721285 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 244 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 181, 94 |
| Conread position: | 18-405 |
| Cow position: | chr13:36958561-36958176 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 267 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 18, 131 |
| Conread position: | 23-294 |
| Cow position: | chr13:32546430-32546696 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 204 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 17, 122 |
| Conread position: | 23-433 |
| Cow position: | chr13:60648764-60648350 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 23-449 |
| Cow position: | chr13:33335260-33334849 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 13 |
| Conread position: | 28-349 |
| Cow position: | chr13:34019681-34019363 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 219 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 152, 8 |
| Conread position: | 28-391 |
| Cow position: | chr13:30276273-30275919 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 72, 8 |
| Conread position: | 28-430 |
| Cow position: | chr13:11738964-11739365 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 117 |
| Conread position: | 38-405 |
| Cow position: | chr13:61051975-61051625 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 250 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 99, 46 |
| Conread position: | 38-417 |
| Cow position: | chr13:46527508-46527890 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 54 |
| Conread position: | 38-447 |
| Cow position: | chr13:3179981-3180393 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 76, 6 |
| Conread position: | 38-449 |
| Cow position: | chr13:11794021-11793607 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 139, 16 |
| Conread position: | 41-435 |
| Cow position: | chr13:16816161-16816539 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 269 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 212, 52 |
| Conread position: | 60-447 |
| Cow position: | chr13:21697341-21697733 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 61-447 |
| Cow position: | chr13:34324500-34324109 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 18 |
| Conread position: | 61-450 |
| Cow position: | chr13:61083514-61083884 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 120, 59 |
| Conread position: | 71-405 |
| Cow position: | chr13:21847188-21847508 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 226 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 32, 10 |
| Conread position: | 73-431 |
| Cow position: | chr13:44752066-44752413 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 126, 19 |
| Conread position: | 74-449 |
| Cow position: | chr13:20541169-20540783 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 69 |
| Conread position: | 79-433 |
| Cow position: | chr13:27599276-27598927 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 67 |
| Conread position: | 103-385 |
| Cow position: | chr13:12733806-12733524 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 81, 17 |
| Conread position: | 115-413 |
| Cow position: | chr13:50661414-50661709 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 137-449 |
| Cow position: | chr13:14186156-14186471 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 128 |
Show alignments to all cow chromosomes.