Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-179 |
| Cow position: | chr14:30736057-30736244 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 17, 149 |
| Conread position: | 1-308 |
| Cow position: | chr14:40341942-40342262 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 154 |
| Conread position: | 1-431 |
| Cow position: | chr14:12611315-12611738 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 114 |
| Conread position: | 1-449 |
| Cow position: | chr14:46466569-46467003 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 216, 25 |
| Conread position: | 4-444 |
| Cow position: | chr14:17759987-17759557 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 5-179 |
| Cow position: | chr14:13462413-13462595 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 13, 55 |
| Conread position: | 5-179 |
| Cow position: | chr14:28244778-28244602 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-251 |
| Cow position: | chr14:46391637-46391392 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 23, 32 |
| Conread position: | 5-318 |
| Cow position: | chr14:44689964-44690280 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 140 |
| Conread position: | 5-345 |
| Cow position: | chr14:25365596-25365250 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 252 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 12, 145 |
| Conread position: | 5-351 |
| Cow position: | chr14:50139460-50139816 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-375 |
| Cow position: | chr14:44227271-44227649 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 72 |
| Conread position: | 5-397 |
| Cow position: | chr14:10147767-10148169 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-430 |
| Cow position: | chr14:9046471-9046907 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-430 |
| Cow position: | chr14:38147898-38148316 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 13 |
| Conread position: | 5-433 |
| Cow position: | chr14:29046791-29046342 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr14:751459-751897 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-435 |
| Cow position: | chr14:1659349-1659787 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr14:45671153-45670703 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 5-441 |
| Cow position: | chr14:29775182-29774783 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 311 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 15, 39 |
| Conread position: | 5-444 |
| Cow position: | chr14:44775145-44774729 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 34 |
| Conread position: | 5-444 |
| Cow position: | chr14:48601444-48601009 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 120 |
| Conread position: | 5-445 |
| Cow position: | chr14:44380226-44380688 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 50 |
| Conread position: | 5-447 |
| Cow position: | chr14:12124290-12123838 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-447 |
| Cow position: | chr14:13863202-13862754 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 52 |
| Conread position: | 5-447 |
| Cow position: | chr14:27978254-27978700 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-447 |
| Cow position: | chr14:43559129-43559582 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-447 |
| Cow position: | chr14:45028117-45027658 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-449 |
| Cow position: | chr14:22030551-22030103 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 5-449 |
| Cow position: | chr14:44552742-44553181 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 52 |
| Conread position: | 5-490 |
| Cow position: | chr14:46637444-46637934 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 15 |
| Conread position: | 6-435 |
| Cow position: | chr14:45678184-45677763 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 33 |
| Conread position: | 7-145 |
| Cow position: | chr14:13620245-13620102 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 11, 136 |
| Conread position: | 7-248 |
| Cow position: | chr14:44292108-44292354 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 7-434 |
| Cow position: | chr14:45086137-45086553 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 7-445 |
| Cow position: | chr14:190940-191387 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-445 |
| Cow position: | chr14:17000163-16999715 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 142 |
| Conread position: | 7-449 |
| Cow position: | chr14:5513833-5514274 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr14:7473246-7473698 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 7-449 |
| Cow position: | chr14:16918822-16918375 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr14:17687392-17687842 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 23 |
| Conread position: | 7-449 |
| Cow position: | chr14:19327366-19326916 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 7-449 |
| Cow position: | chr14:32447858-32448300 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 7-449 |
| Cow position: | chr14:44289963-44290410 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 8-412 |
| Cow position: | chr14:23932502-23932897 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 173, 98 |
| Conread position: | 9-355 |
| Cow position: | chr14:16272396-16272043 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 9-431 |
| Cow position: | chr14:30595453-30595025 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 25 |
| Conread position: | 9-435 |
| Cow position: | chr14:38814586-38814158 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 105, 11 |
| Conread position: | 10-449 |
| Cow position: | chr14:15274939-15274494 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 16-429 |
| Cow position: | chr14:45188887-45188479 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 62 |
| Conread position: | 17-263 |
| Cow position: | chr14:31882366-31882619 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 17-273 |
| Cow position: | chr14:45081963-45082225 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 17-296 |
| Cow position: | chr14:30583687-30583405 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 17-320 |
| Cow position: | chr14:44582276-44582583 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 22, 14 |
| Conread position: | 17-434 |
| Cow position: | chr14:45207202-45207611 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 90 |
| Conread position: | 17-435 |
| Cow position: | chr14:23256446-23256029 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 19 |
| Conread position: | 17-447 |
| Cow position: | chr14:48826195-48826619 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 23 |
| Conread position: | 17-449 |
| Cow position: | chr14:5529971-5530404 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 81 |
| Conread position: | 17-449 |
| Cow position: | chr14:11153243-11152806 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 129 |
| Conread position: | 17-449 |
| Cow position: | chr14:45710815-45710393 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 23 |
| Conread position: | 18-449 |
| Cow position: | chr14:13303868-13304299 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 18-449 |
| Cow position: | chr14:43555885-43556327 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 77 |
| Conread position: | 20-402 |
| Cow position: | chr14:11654936-11654566 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 10 |
| Conread position: | 23-296 |
| Cow position: | chr14:35384902-35384636 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 168, 17 |
| Conread position: | 23-299 |
| Cow position: | chr14:45163168-45163445 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 125 |
| Conread position: | 23-407 |
| Cow position: | chr14:27990687-27990324 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 13 |
| Conread position: | 23-430 |
| Cow position: | chr14:18417420-18417829 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 123 |
| Conread position: | 23-449 |
| Cow position: | chr14:20783384-20783814 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 30 |
| Conread position: | 23-450 |
| Cow position: | chr14:25692866-25693293 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 144, 13 |
| Conread position: | 24-356 |
| Cow position: | chr14:33689123-33689443 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 95, 117 |
| Conread position: | 24-401 |
| Cow position: | chr14:33798394-33798772 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 258 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 120 |
| Conread position: | 24-405 |
| Cow position: | chr14:32532077-32531709 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 250 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 161, 12 |
| Conread position: | 26-449 |
| Cow position: | chr14:18105352-18105768 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 315, 22 |
| Conread position: | 28-178 |
| Cow position: | chr14:47926008-47926156 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 104, 39 |
| Conread position: | 28-296 |
| Cow position: | chr14:31392394-31392128 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 12, 114 |
| Conread position: | 28-447 |
| Cow position: | chr14:13834062-13834484 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 8 |
| Conread position: | 34-449 |
| Cow position: | chr14:24996670-24996271 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 112 |
| Conread position: | 37-411 |
| Cow position: | chr14:10861685-10861320 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 247 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 39-449 |
| Cow position: | chr14:12742110-12741700 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 68-435 |
| Cow position: | chr14:2287227-2287597 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 76 |
| Conread position: | 74-411 |
| Cow position: | chr14:35930558-35930894 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 239 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 47, 142 |
| Conread position: | 75-411 |
| Cow position: | chr14:33605943-33605608 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 9, 17 |
| Conread position: | 112-430 |
| Cow position: | chr14:9521709-9521393 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 29 |
| Conread position: | 130-433 |
| Cow position: | chr14:16808297-16807992 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 11 |
| Conread position: | 140-449 |
| Cow position: | chr14:9102566-9102875 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 216 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 40, 119 |
Show alignments to all cow chromosomes.