Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-164
Cow position: chr16:49234088-49233918 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 136
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 17, 146

Conread position: 1-177
Cow position: chr16:25933243-25933426 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 141
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 17, 147

Conread position: 1-306
Cow position: chr16:41562633-41562942 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 220
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 17, 31

Conread position: 1-314
Cow position: chr16:17056426-17056108 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 235
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 20, 79

Conread position: 1-356
Cow position: chr16:30071976-30072321 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 242
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 20, 12

Conread position: 1-433
Cow position: chr16:52591129-52590701 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 30

Conread position: 1-435
Cow position: chr16:16898001-16898441 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 38

Conread position: 1-441
Cow position: chr16:41685701-41685261 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 146

Conread position: 1-447
Cow position: chr16:51084708-51085157 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 21

Conread position: 1-449
Cow position: chr16:25258369-25258804 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 42

Conread position: 1-449
Cow position: chr16:49221339-49220916 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 2-433
Cow position: chr16:25001748-25001308 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 70

Conread position: 4-110
Cow position: chr16:20331348-20331456 (view UCSC Genome Browser custom track)
Alignm length: 110
Alignm identity: 93
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 14, 39

Conread position: 4-273
Cow position: chr16:25081332-25081617 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 19, 146

Conread position: 4-447
Cow position: chr16:20202544-20202975 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 72

Conread position: 4-447
Cow position: chr16:29047577-29048022 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 16

Conread position: 4-449
Cow position: chr16:8815553-8815106 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 32

Conread position: 4-449
Cow position: chr16:28470523-28470060 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 140

Conread position: 4-450
Cow position: chr16:32937073-32937515 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 38

Conread position: 5-177
Cow position: chr16:3918617-3918796 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 137
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 13, 34

Conread position: 5-177
Cow position: chr16:11284144-11284323 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 138
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 34

Conread position: 5-177
Cow position: chr16:21186167-21186346 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 133
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 15, 146

Conread position: 5-296
Cow position: chr16:19080518-19080819 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 146

Conread position: 5-394
Cow position: chr16:49255677-49255286 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 141

Conread position: 5-402
Cow position: chr16:10375049-10374642 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-428
Cow position: chr16:16228872-16229294 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 111

Conread position: 5-435
Cow position: chr16:28169802-28169334 (view UCSC Genome Browser custom track)
Alignm length: 471
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr16:28196693-28196253 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-447
Cow position: chr16:3088653-3088204 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr16:19779100-19778652 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 145

Conread position: 5-447
Cow position: chr16:25086169-25086611 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-448
Cow position: chr16:33080-33526 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-449
Cow position: chr16:15185626-15186081 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 6-237
Cow position: chr16:27714261-27714033 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 187
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 11, 32

Conread position: 6-448
Cow position: chr16:27786592-27787046 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 295
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 11, 26

Conread position: 7-258
Cow position: chr16:15477397-15477655 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 33, 15

Conread position: 7-315
Cow position: chr16:26664306-26664620 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-352
Cow position: chr16:406486-406132 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-415
Cow position: chr16:41166099-41165704 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 273
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 45

Conread position: 7-433
Cow position: chr16:837870-838303 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-445
Cow position: chr16:23983850-23984297 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 7-445
Cow position: chr16:40557391-40556947 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 115

Conread position: 7-449
Cow position: chr16:1566901-1566460 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 113

Conread position: 7-449
Cow position: chr16:23535336-23534899 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 7-449
Cow position: chr16:25442181-25442631 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 141

Conread position: 7-449
Cow position: chr16:25456924-25456479 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr16:27732825-27732380 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 32

Conread position: 8-445
Cow position: chr16:1432745-1433180 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 60

Conread position: 8-447
Cow position: chr16:1960052-1959622 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 12

Conread position: 9-417
Cow position: chr16:28436906-28436492 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 11

Conread position: 9-445
Cow position: chr16:10967516-10967109 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 9-447
Cow position: chr16:16270573-16270136 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 11

Conread position: 9-449
Cow position: chr16:3330499-3330931 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 103, 11

Conread position: 10-294
Cow position: chr16:23251868-23251577 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 11, 19

Conread position: 10-435
Cow position: chr16:5485287-5485711 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 29

Conread position: 10-448
Cow position: chr16:43896705-43896261 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 10-449
Cow position: chr16:2726660-2726213 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 141

Conread position: 10-449
Cow position: chr16:40295604-40295165 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 11-449
Cow position: chr16:51403329-51402874 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 9

Conread position: 17-274
Cow position: chr16:39366342-39366088 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 185
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 87, 18

Conread position: 17-326
Cow position: chr16:31591349-31591040 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 16

Conread position: 17-406
Cow position: chr16:10565212-10564824 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 19

Conread position: 17-427
Cow position: chr16:26978695-26979092 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 131, 19

Conread position: 17-433
Cow position: chr16:27594070-27594493 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 131

Conread position: 19-295
Cow position: chr16:37481849-37481582 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 195
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 34, 9

Conread position: 20-306
Cow position: chr16:11781824-11781541 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 20, 8

Conread position: 23-239
Cow position: chr16:26105477-26105256 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 159
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 91, 120

Conread position: 23-317
Cow position: chr16:4478397-4478097 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 13

Conread position: 23-426
Cow position: chr16:5890568-5890980 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 17

Conread position: 23-430
Cow position: chr16:34530882-34531270 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 13

Conread position: 23-435
Cow position: chr16:41571964-41572381 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 167

Conread position: 24-306
Cow position: chr16:7464888-7465176 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 122

Conread position: 32-242
Cow position: chr16:38023903-38024119 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 157
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 77, 111

Conread position: 32-435
Cow position: chr16:18677932-18678327 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 35

Conread position: 34-434
Cow position: chr16:5871477-5871874 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 323
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 7

Conread position: 36-431
Cow position: chr16:707664-707279 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 267
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 153, 22

Conread position: 38-448
Cow position: chr16:10568241-10568629 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 272
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 162, 9

Conread position: 38-449
Cow position: chr16:1860817-1861237 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 108

Conread position: 41-449
Cow position: chr16:26655601-26655989 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 269
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 202, 78

Conread position: 44-432
Cow position: chr16:23671297-23671683 (view UCSC Genome Browser custom track)
Alignm length: 394
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 100

Conread position: 47-435
Cow position: chr16:47474850-47475231 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 67, 96

Conread position: 48-447
Cow position: chr16:5527789-5527386 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 91

Conread position: 52-449
Cow position: chr16:37480256-37479854 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 60, 91

Conread position: 57-447
Cow position: chr16:28158163-28158567 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 86

Conread position: 68-449
Cow position: chr16:49385652-49386033 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 79-402
Cow position: chr16:27299510-27299193 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 229
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 132, 28

Conread position: 79-436
Cow position: chr16:4301567-4301205 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 9

Conread position: 82-326
Cow position: chr16:29208539-29208303 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 187
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 44, 60

Conread position: 82-453
Cow position: chr16:41762463-41762825 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 258
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 9, 64

Conread position: 94-445
Cow position: chr16:39824567-39824918 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 49

Conread position: 103-449
Cow position: chr16:49233828-49233488 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 41

Conread position: 121-403
Cow position: chr16:32883432-32883155 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 184
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 69, 21

Conread position: 137-445
Cow position: chr16:47627960-47627656 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 110

Conread position: 145-449
Cow position: chr16:18667083-18667388 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 119

Conread position: 254-450
Cow position: chr16:46628790-46628987 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 139
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 123, 131

Show alignments to all cow chromosomes.