Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-138 |
| Cow position: | chr17:4208503-4208644 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 116 |
| Conread position: | 1-445 |
| Cow position: | chr17:2149558-2149966 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 313 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 8, 111 |
| Conread position: | 1-449 |
| Cow position: | chr17:3707663-3707220 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 95 |
| Conread position: | 1-449 |
| Cow position: | chr17:16121440-16121030 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 2-337 |
| Cow position: | chr17:13675164-13674828 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 41 |
| Conread position: | 2-373 |
| Cow position: | chr17:239435-239803 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 3-433 |
| Cow position: | chr17:23038697-23039123 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 114 |
| Conread position: | 3-434 |
| Cow position: | chr17:14039924-14039476 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 145 |
| Conread position: | 3-447 |
| Cow position: | chr17:251266-251718 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 4-447 |
| Cow position: | chr17:2246966-2246512 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 146 |
| Conread position: | 5-229 |
| Cow position: | chr17:20389963-20389729 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-263 |
| Cow position: | chr17:6120839-6121101 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 204 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-294 |
| Cow position: | chr17:14296146-14295862 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 5-346 |
| Cow position: | chr17:21769884-21769533 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 5-374 |
| Cow position: | chr17:18194930-18195285 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 39 |
| Conread position: | 5-429 |
| Cow position: | chr17:4083146-4083574 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 114 |
| Conread position: | 5-430 |
| Cow position: | chr17:15436905-15437341 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-433 |
| Cow position: | chr17:11783977-11784427 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr17:34157243-34157684 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-445 |
| Cow position: | chr17:8203078-8203502 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 15 |
| Conread position: | 5-445 |
| Cow position: | chr17:43989625-43990073 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-447 |
| Cow position: | chr17:182699-183145 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 142 |
| Conread position: | 5-447 |
| Cow position: | chr17:15372344-15372786 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 145 |
| Conread position: | 5-447 |
| Cow position: | chr17:20086643-20086202 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-447 |
| Cow position: | chr17:20099344-20098903 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-447 |
| Cow position: | chr17:39049337-39049789 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-449 |
| Cow position: | chr17:20403553-20403995 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 39 |
| Conread position: | 5-449 |
| Cow position: | chr17:24783285-24783738 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 7-296 |
| Cow position: | chr17:19020704-19020981 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 7-402 |
| Cow position: | chr17:2580749-2581151 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 132 |
| Conread position: | 7-447 |
| Cow position: | chr17:11086601-11086153 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 7-449 |
| Cow position: | chr17:3640775-3640329 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr17:5227750-5228198 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 7-449 |
| Cow position: | chr17:6069674-6070119 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-449 |
| Cow position: | chr17:6260986-6261435 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 31 |
| Conread position: | 7-449 |
| Cow position: | chr17:15851814-15852269 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 144 |
| Conread position: | 7-449 |
| Cow position: | chr17:19267701-19267269 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr17:20080745-20080320 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 36 |
| Conread position: | 7-449 |
| Cow position: | chr17:24028872-24028426 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-450 |
| Cow position: | chr17:14240625-14241082 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 8-453 |
| Cow position: | chr17:2077865-2077412 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 9-356 |
| Cow position: | chr17:33284701-33284375 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 11 |
| Conread position: | 12-449 |
| Cow position: | chr17:40805950-40806383 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 24 |
| Conread position: | 17-426 |
| Cow position: | chr17:9080283-9079867 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 17-435 |
| Cow position: | chr17:2263281-2263701 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 126 |
| Conread position: | 17-435 |
| Cow position: | chr17:14215889-14215486 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 18-405 |
| Cow position: | chr17:11748877-11749259 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 246 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 61 |
| Conread position: | 23-290 |
| Cow position: | chr17:2555413-2555142 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 37, 55 |
| Conread position: | 23-405 |
| Cow position: | chr17:38875637-38876014 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 256 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 17, 71 |
| Conread position: | 23-419 |
| Cow position: | chr17:6913557-6913175 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 259 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 20, 48 |
| Conread position: | 23-445 |
| Cow position: | chr17:1656705-1656310 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 71 |
| Conread position: | 24-340 |
| Cow position: | chr17:22559115-22559423 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 12 |
| Conread position: | 24-441 |
| Cow position: | chr17:1786810-1786398 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 43 |
| Conread position: | 26-297 |
| Cow position: | chr17:4941578-4941303 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 41 |
| Conread position: | 28-392 |
| Cow position: | chr17:4168329-4168690 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 260 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 12, 42 |
| Conread position: | 28-447 |
| Cow position: | chr17:1538584-1538177 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 285 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 12, 118 |
| Conread position: | 36-356 |
| Cow position: | chr17:31534022-31534333 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 49 |
| Conread position: | 38-373 |
| Cow position: | chr17:18592765-18593097 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 227 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 45-435 |
| Cow position: | chr17:1704037-1704433 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 95 |
| Conread position: | 48-457 |
| Cow position: | chr17:733174-732758 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 92 |
| Conread position: | 55-449 |
| Cow position: | chr17:22133426-22133842 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 88 |
| Conread position: | 68-422 |
| Cow position: | chr17:37142-37482 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 120, 35 |
| Conread position: | 105-417 |
| Cow position: | chr17:36001823-36001506 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 217 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 122-449 |
| Cow position: | chr17:29302004-29302333 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 18 |
| Conread position: | 123-445 |
| Cow position: | chr17:13967175-13967497 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 20 |
Show alignments to all cow chromosomes.