Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 4-314 |
| Cow position: | chr18:16080004-16080323 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-449 |
| Cow position: | chr18:14131726-14132174 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-449 |
| Cow position: | chr18:16089452-16089904 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 5-177 |
| Cow position: | chr18:51661674-51661852 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 12, 73 |
| Conread position: | 5-269 |
| Cow position: | chr18:46875998-46875749 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 14, 77 |
| Conread position: | 5-285 |
| Cow position: | chr18:11273783-11273495 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 83 |
| Conread position: | 5-348 |
| Cow position: | chr18:54170177-54169822 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 5-359 |
| Cow position: | chr18:54022797-54022438 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 39 |
| Conread position: | 5-435 |
| Cow position: | chr18:26245288-26244852 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 33 |
| Conread position: | 5-444 |
| Cow position: | chr18:19353697-19354146 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-445 |
| Cow position: | chr18:51695033-51695482 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 70 |
| Conread position: | 5-447 |
| Cow position: | chr18:47742836-47743274 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-447 |
| Cow position: | chr18:51461719-51461268 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-447 |
| Cow position: | chr18:54004838-54004398 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 7-316 |
| Cow position: | chr18:52652245-52652563 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 7-449 |
| Cow position: | chr18:14417313-14417751 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr18:16175283-16174836 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr18:27988519-27988970 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 7-449 |
| Cow position: | chr18:28972552-28972102 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 7-450 |
| Cow position: | chr18:36509949-36510402 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 138 |
| Conread position: | 8-449 |
| Cow position: | chr18:23798983-23799429 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 137 |
| Conread position: | 8-449 |
| Cow position: | chr18:29865274-29864826 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 9-248 |
| Cow position: | chr18:33300639-33300881 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 172 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 31, 19 |
| Conread position: | 9-330 |
| Cow position: | chr18:29046611-29046291 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 224 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 9-419 |
| Cow position: | chr18:20692833-20692420 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 273 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 9-441 |
| Cow position: | chr18:4947316-4947723 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 9-447 |
| Cow position: | chr18:29238238-29238668 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 17-301 |
| Cow position: | chr18:17672456-17672169 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 6 |
| Conread position: | 17-348 |
| Cow position: | chr18:27836961-27836622 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 17-447 |
| Cow position: | chr18:35054488-35054906 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 23 |
| Conread position: | 20-408 |
| Cow position: | chr18:19471110-19471514 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 237 |
| Conread position: | 25-405 |
| Cow position: | chr18:41839449-41839076 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 118 |
| Conread position: | 28-334 |
| Cow position: | chr18:19405216-19404919 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 200 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 12, 107 |
| Conread position: | 28-391 |
| Cow position: | chr18:38342933-38342578 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 8 |
| Conread position: | 30-355 |
| Cow position: | chr18:13139757-13139431 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 216 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 186 |
| Conread position: | 32-336 |
| Cow position: | chr18:54271845-54272156 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 133, 76 |
| Conread position: | 34-449 |
| Cow position: | chr18:25352629-25353043 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 25 |
| Conread position: | 35-449 |
| Cow position: | chr18:51482223-51482638 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 109 |
| Conread position: | 36-447 |
| Cow position: | chr18:35313741-35314143 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 265 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 142, 88 |
| Conread position: | 36-450 |
| Cow position: | chr18:19485513-19485928 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 38 |
| Conread position: | 38-402 |
| Cow position: | chr18:34043974-34044330 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 38-408 |
| Cow position: | chr18:14421654-14422019 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 250 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 77, 49 |
| Conread position: | 41-446 |
| Cow position: | chr18:33270294-33270679 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 33 |
| Conread position: | 44-184 |
| Cow position: | chr18:40052290-40052431 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 108 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 77, 97 |
| Conread position: | 49-451 |
| Cow position: | chr18:40316050-40315665 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 272 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 65, 15 |
| Conread position: | 61-237 |
| Cow position: | chr18:20835046-20835225 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 53, 82 |
| Conread position: | 64-386 |
| Cow position: | chr18:16720439-16720116 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 211, 144 |
| Conread position: | 92-431 |
| Cow position: | chr18:18000021-17999689 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 26, 39 |
| Conread position: | 95-405 |
| Cow position: | chr18:37157800-37157485 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 48 |
| Conread position: | 107-441 |
| Cow position: | chr18:17962303-17961973 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 20, 34 |
| Conread position: | 116-449 |
| Cow position: | chr18:5534460-5534790 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
| Conread position: | 129-393 |
| Cow position: | chr18:2646059-2645805 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 185 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 99, 11 |
Show alignments to all cow chromosomes.