Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-138 |
| Cow position: | chr20:8216802-8216951 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 60 |
| Conread position: | 1-432 |
| Cow position: | chr20:5466325-5466742 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 110 |
| Conread position: | 4-449 |
| Cow position: | chr20:9344265-9344700 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 35 |
| Conread position: | 4-449 |
| Cow position: | chr20:13499409-13499857 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 141 |
| Conread position: | 4-449 |
| Cow position: | chr20:13764194-13764645 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 48 |
| Conread position: | 5-174 |
| Cow position: | chr20:13678749-13678573 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 5-178 |
| Cow position: | chr20:14869660-14869489 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 5-179 |
| Cow position: | chr20:22210336-22210512 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 12, 104 |
| Conread position: | 5-266 |
| Cow position: | chr20:19340933-19341198 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 5-300 |
| Cow position: | chr20:27338496-27338797 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 144 |
| Conread position: | 5-361 |
| Cow position: | chr20:18323650-18323304 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 246 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 117, 18 |
| Conread position: | 5-390 |
| Cow position: | chr20:31609511-31609139 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 255 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 112, 13 |
| Conread position: | 5-431 |
| Cow position: | chr20:32120632-32121057 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 21 |
| Conread position: | 5-432 |
| Cow position: | chr20:871710-871291 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 5-435 |
| Cow position: | chr20:824068-824503 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-435 |
| Cow position: | chr20:26054403-26053954 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 5-435 |
| Cow position: | chr20:30429567-30430008 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-447 |
| Cow position: | chr20:16178470-16178000 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-447 |
| Cow position: | chr20:19439212-19439664 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-448 |
| Cow position: | chr20:20753495-20753072 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 5-449 |
| Cow position: | chr20:9546966-9547396 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 15 |
| Conread position: | 5-449 |
| Cow position: | chr20:15066766-15067202 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 6-179 |
| Cow position: | chr20:13663752-13663571 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 12, 144 |
| Conread position: | 7-441 |
| Cow position: | chr20:30686872-30687327 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 7-444 |
| Cow position: | chr20:23800183-23800628 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr20:12437122-12436670 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 7-449 |
| Cow position: | chr20:21915931-21916387 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 145 |
| Conread position: | 7-449 |
| Cow position: | chr20:25849522-25849080 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 140 |
| Conread position: | 9-334 |
| Cow position: | chr20:9520831-9520517 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 12 |
| Conread position: | 9-441 |
| Cow position: | chr20:24615586-24615167 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 10 |
| Conread position: | 9-445 |
| Cow position: | chr20:21395226-21395656 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 103, 11 |
| Conread position: | 10-449 |
| Cow position: | chr20:5536250-5536694 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 10-449 |
| Cow position: | chr20:29949831-29950275 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 137 |
| Conread position: | 17-317 |
| Cow position: | chr20:18314047-18313754 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 23 |
| Conread position: | 17-449 |
| Cow position: | chr20:27870516-27870958 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 18-446 |
| Cow position: | chr20:926094-925665 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 283 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 22, 92 |
| Conread position: | 18-448 |
| Cow position: | chr20:15293302-15293729 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 32 |
| Conread position: | 24-314 |
| Cow position: | chr20:42919147-42919419 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 6, 18 |
| Conread position: | 27-449 |
| Cow position: | chr20:28162155-28162575 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 9 |
| Conread position: | 28-320 |
| Cow position: | chr20:22698320-22698599 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 12, 82 |
| Conread position: | 32-339 |
| Cow position: | chr20:19356098-19356398 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 109 |
| Conread position: | 32-404 |
| Cow position: | chr20:40872791-40872409 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 11, 297 |
| Conread position: | 34-432 |
| Cow position: | chr20:18107844-18108234 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 264 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 81, 35 |
| Conread position: | 35-246 |
| Cow position: | chr20:14221235-14221029 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 145 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 160, 80 |
| Conread position: | 43-449 |
| Cow position: | chr20:41364296-41363893 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 36 |
| Conread position: | 53-445 |
| Cow position: | chr20:8972829-8972433 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 91 |
| Conread position: | 92-282 |
| Cow position: | chr20:14869186-14869001 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 22, 51 |
| Conread position: | 102-362 |
| Cow position: | chr20:14742686-14742960 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 141, 82 |
| Conread position: | 131-422 |
| Cow position: | chr20:35126091-35126385 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 9 |
Show alignments to all cow chromosomes.