Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-366 |
| Cow position: | chr21:2938063-2937706 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 17, 93 |
| Conread position: | 1-410 |
| Cow position: | chr21:28613733-28614147 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 20 |
| Conread position: | 1-430 |
| Cow position: | chr21:30474-30883 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 1-430 |
| Cow position: | chr21:1286800-1286372 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 21 |
| Conread position: | 1-449 |
| Cow position: | chr21:2712338-2712758 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 3-303 |
| Cow position: | chr21:42914769-42915081 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 3-448 |
| Cow position: | chr21:22752003-22751584 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 4-374 |
| Cow position: | chr21:21520011-21520390 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 14 |
| Conread position: | 5-172 |
| Cow position: | chr21:27035989-27035815 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-293 |
| Cow position: | chr21:45786023-45785748 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 13, 102 |
| Conread position: | 5-336 |
| Cow position: | chr21:39480202-39479883 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 5-369 |
| Cow position: | chr21:34822802-34822428 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-407 |
| Cow position: | chr21:38023550-38023946 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 280 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 5-433 |
| Cow position: | chr21:29004121-29003682 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 5-444 |
| Cow position: | chr21:37372648-37373083 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 25 |
| Conread position: | 5-445 |
| Cow position: | chr21:11507022-11507471 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 5-447 |
| Cow position: | chr21:2417624-2418064 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 38 |
| Conread position: | 5-447 |
| Cow position: | chr21:2512257-2512709 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-449 |
| Cow position: | chr21:36979506-36979040 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 304 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 18, 144 |
| Conread position: | 5-449 |
| Cow position: | chr21:47942357-47942808 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-453 |
| Cow position: | chr21:26635746-26635290 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 6-449 |
| Cow position: | chr21:218435-218869 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 33 |
| Conread position: | 7-201 |
| Cow position: | chr21:5839851-5839647 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 11, 178 |
| Conread position: | 7-376 |
| Cow position: | chr21:35145171-35145536 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-445 |
| Cow position: | chr21:5018552-5018998 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 7-447 |
| Cow position: | chr21:3780182-3780633 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 7-449 |
| Cow position: | chr21:27284880-27285316 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 7-449 |
| Cow position: | chr21:31514904-31514454 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 7-449 |
| Cow position: | chr21:40270262-40269810 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 8-449 |
| Cow position: | chr21:147339-147783 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 113 |
| Conread position: | 8-449 |
| Cow position: | chr21:26836602-26837052 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 12 |
| Conread position: | 9-447 |
| Cow position: | chr21:468316-468757 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 128 |
| Conread position: | 9-449 |
| Cow position: | chr21:33253595-33254043 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 30 |
| Conread position: | 16-447 |
| Cow position: | chr21:13298024-13298451 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 28 |
| Conread position: | 17-342 |
| Cow position: | chr21:12054592-12054262 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 17-447 |
| Cow position: | chr21:2880396-2879966 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 17-447 |
| Cow position: | chr21:27567180-27567603 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 23 |
| Conread position: | 17-449 |
| Cow position: | chr21:10851509-10851939 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 19 |
| Conread position: | 17-449 |
| Cow position: | chr21:30598055-30597609 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 125 |
| Conread position: | 19-447 |
| Cow position: | chr21:4588551-4588155 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 22-441 |
| Cow position: | chr21:2539653-2539224 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 30 |
| Conread position: | 23-291 |
| Cow position: | chr21:4185351-4185614 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 209 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 17, 45 |
| Conread position: | 23-409 |
| Cow position: | chr21:28736598-28737010 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 122 |
| Conread position: | 23-435 |
| Cow position: | chr21:38801865-38802285 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 126 |
| Conread position: | 23-449 |
| Cow position: | chr21:47646764-47647194 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 335 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 122 |
| Conread position: | 27-427 |
| Cow position: | chr21:21714060-21713660 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 262 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 120 |
| Conread position: | 29-428 |
| Cow position: | chr21:1075500-1075898 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 270 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 11, 106 |
| Conread position: | 32-384 |
| Cow position: | chr21:46170808-46171167 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 231 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 110, 54 |
| Conread position: | 32-441 |
| Cow position: | chr21:31250454-31250846 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 47 |
| Conread position: | 34-449 |
| Cow position: | chr21:5839745-5839342 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 110 |
| Conread position: | 36-434 |
| Cow position: | chr21:41404759-41405163 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 107 |
| Conread position: | 36-444 |
| Cow position: | chr21:39426515-39426921 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 83, 108 |
| Conread position: | 36-449 |
| Cow position: | chr21:6625982-6626394 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 320 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 72 |
| Conread position: | 37-435 |
| Cow position: | chr21:24085355-24084954 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 33 |
| Conread position: | 39-449 |
| Cow position: | chr21:34655287-34655690 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 71 |
| Conread position: | 41-447 |
| Cow position: | chr21:28256892-28257281 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 99 |
| Conread position: | 53-449 |
| Cow position: | chr21:30563136-30563526 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 6 |
| Conread position: | 66-447 |
| Cow position: | chr21:361140-361532 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 75 |
| Conread position: | 70-274 |
| Cow position: | chr21:18048700-18048502 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 110, 11 |
| Conread position: | 83-432 |
| Cow position: | chr21:23708718-23709072 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 230 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 47, 8 |
| Conread position: | 88-411 |
| Cow position: | chr21:13088780-13089101 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 48, 99 |
| Conread position: | 92-447 |
| Cow position: | chr21:6414524-6414164 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 51 |
| Conread position: | 99-444 |
| Cow position: | chr21:997327-996986 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 42 |
| Conread position: | 151-433 |
| Cow position: | chr21:18816690-18816409 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 30 |
Show alignments to all cow chromosomes.