Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-106
Cow position: chr22:1323438-1323548 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 16, 0

Conread position: 1-198
Cow position: chr22:34600578-34600781 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 160
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 17, 96

Conread position: 1-239
Cow position: chr22:37134308-37134553 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 183
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 10, 17

Conread position: 1-280
Cow position: chr22:11033344-11033610 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 208
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 19, 118

Conread position: 1-447
Cow position: chr22:1281488-1281046 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 113, 21

Conread position: 1-448
Cow position: chr22:23800973-23800543 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 35

Conread position: 1-452
Cow position: chr22:19243632-19244075 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 145

Conread position: 3-447
Cow position: chr22:21195258-21194809 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 36

Conread position: 4-200
Cow position: chr22:2394750-2394549 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 148
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 18, 142

Conread position: 4-428
Cow position: chr22:1268517-1268083 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 144

Conread position: 4-449
Cow position: chr22:559469-559018 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 35

Conread position: 5-258
Cow position: chr22:8120841-8120588 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 195
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 13, 38

Conread position: 5-272
Cow position: chr22:7304417-7304142 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 203
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 13, 34

Conread position: 5-306
Cow position: chr22:6501898-6501597 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 5-382
Cow position: chr22:24951794-24952181 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-433
Cow position: chr22:10908599-10908161 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-434
Cow position: chr22:46580480-46580042 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr22:694861-695289 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr22:1880041-1880481 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr22:3277120-3276680 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-435
Cow position: chr22:11803814-11803376 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 146

Conread position: 5-435
Cow position: chr22:27308537-27308101 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 112

Conread position: 5-435
Cow position: chr22:44492292-44492725 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 144

Conread position: 5-447
Cow position: chr22:538343-538797 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 142

Conread position: 5-447
Cow position: chr22:44348621-44348179 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 135

Conread position: 5-447
Cow position: chr22:44368241-44367793 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 18

Conread position: 5-447
Cow position: chr22:46585326-46584880 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-448
Cow position: chr22:46614542-46614990 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 141

Conread position: 5-449
Cow position: chr22:3305358-3304913 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 61

Conread position: 6-297
Cow position: chr22:316753-317043 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 6-349
Cow position: chr22:18028526-18028879 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 6-406
Cow position: chr22:13547533-13547128 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 272
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 14, 141

Conread position: 6-431
Cow position: chr22:39689723-39690128 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 289
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 12, 33

Conread position: 6-433
Cow position: chr22:6021905-6022327 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 6-447
Cow position: chr22:16202151-16202601 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 142

Conread position: 6-447
Cow position: chr22:35670425-35669982 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 91

Conread position: 7-375
Cow position: chr22:18815124-18814749 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 291
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-419
Cow position: chr22:35906149-35905725 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr22:6332951-6333399 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 139

Conread position: 7-449
Cow position: chr22:36860298-36859858 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr22:37292434-37291987 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 9-234
Cow position: chr22:38550640-38550862 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 179
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 105, 11

Conread position: 9-307
Cow position: chr22:44458195-44458496 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 10

Conread position: 9-402
Cow position: chr22:45582164-45582553 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 11

Conread position: 9-414
Cow position: chr22:44606435-44606046 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 274
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 30, 11

Conread position: 9-435
Cow position: chr22:290450-290026 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 9-444
Cow position: chr22:44935218-44935648 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 10

Conread position: 9-449
Cow position: chr22:17327213-17326767 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 30

Conread position: 10-447
Cow position: chr22:15852671-15853111 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 132

Conread position: 10-449
Cow position: chr22:39468264-39467827 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 26

Conread position: 13-431
Cow position: chr22:10304074-10303670 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 273
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 166, 18

Conread position: 14-430
Cow position: chr22:41241477-41241901 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 100, 127

Conread position: 17-165
Cow position: chr22:24537012-24537163 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 47, 127

Conread position: 17-445
Cow position: chr22:296707-297136 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 88

Conread position: 17-447
Cow position: chr22:21035135-21034701 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 23

Conread position: 18-449
Cow position: chr22:44397688-44398120 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 62

Conread position: 20-174
Cow position: chr22:13575879-13575723 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 117
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 18, 8

Conread position: 23-449
Cow position: chr22:21590678-21591113 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 124

Conread position: 24-447
Cow position: chr22:3803444-3803869 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 16

Conread position: 28-376
Cow position: chr22:45510275-45509934 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 242
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 89, 8

Conread position: 28-390
Cow position: chr22:13673546-13673189 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 120

Conread position: 32-404
Cow position: chr22:33954122-33954467 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 251
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 88, 31

Conread position: 32-447
Cow position: chr22:30128855-30129267 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 108

Conread position: 32-447
Cow position: chr22:30146504-30146916 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 108

Conread position: 35-448
Cow position: chr22:19585718-19585305 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 117

Conread position: 36-432
Cow position: chr22:44518358-44517968 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 66

Conread position: 37-339
Cow position: chr22:283811-283532 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 201
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 44-251
Cow position: chr22:4066260-4066055 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 150
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 131, 68

Conread position: 45-445
Cow position: chr22:13766649-13767045 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 316
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 16

Conread position: 53-373
Cow position: chr22:36185047-36185368 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 248
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 90

Conread position: 55-367
Cow position: chr22:44478052-44478351 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 26

Conread position: 85-315
Cow position: chr22:9045595-9045824 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 165
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 30, 58

Conread position: 88-328
Cow position: chr22:44366781-44366537 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 188
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 55

Conread position: 90-447
Cow position: chr22:30677387-30677025 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 95-299
Cow position: chr22:40370813-40371011 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 159
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 17, 12

Conread position: 104-411
Cow position: chr22:36270520-36270832 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 221
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 76, 36

Conread position: 137-348
Cow position: chr22:15310564-15310350 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 0

Conread position: 143-405
Cow position: chr22:36276960-36277230 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 201
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 37, 84

Conread position: 144-449
Cow position: chr22:45014734-45015035 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 235
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 40

Show alignments to all cow chromosomes.