Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-243 |
| Cow position: | chr23:38581941-38582176 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 19, 37 |
| Conread position: | 1-435 |
| Cow position: | chr23:13512338-13512747 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 38 |
| Conread position: | 1-445 |
| Cow position: | chr23:31648792-31648349 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 1-449 |
| Cow position: | chr23:16055008-16055459 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 376 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 121 |
| Conread position: | 4-441 |
| Cow position: | chr23:15178310-15178742 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-449 |
| Cow position: | chr23:2794017-2793585 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 16 |
| Conread position: | 5-177 |
| Cow position: | chr23:14923061-14922882 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-279 |
| Cow position: | chr23:37716740-37717015 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 5-291 |
| Cow position: | chr23:23282465-23282737 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 5-293 |
| Cow position: | chr23:3707363-3707652 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 5-328 |
| Cow position: | chr23:19949353-19949021 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-352 |
| Cow position: | chr23:21243502-21243147 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 13 |
| Conread position: | 5-405 |
| Cow position: | chr23:16613942-16613545 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 5-407 |
| Cow position: | chr23:30237506-30237929 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 5-407 |
| Cow position: | chr23:38691726-38692136 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 144 |
| Conread position: | 5-426 |
| Cow position: | chr23:14972737-14972292 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 20 |
| Conread position: | 5-430 |
| Cow position: | chr23:29451114-29450660 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 64 |
| Conread position: | 5-434 |
| Cow position: | chr23:1012561-1012147 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 5-435 |
| Cow position: | chr23:11714633-11714193 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-435 |
| Cow position: | chr23:28218658-28219098 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-445 |
| Cow position: | chr23:15876332-15875887 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 144 |
| Conread position: | 5-447 |
| Cow position: | chr23:7314143-7314595 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-449 |
| Cow position: | chr23:5873339-5872885 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-453 |
| Cow position: | chr23:41141992-41141535 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 6-471 |
| Cow position: | chr23:8287198-8287648 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 113 |
| Conread position: | 7-333 |
| Cow position: | chr23:27400762-27401096 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 7-356 |
| Cow position: | chr23:2718550-2718907 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 7-441 |
| Cow position: | chr23:4818262-4818701 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 7-448 |
| Cow position: | chr23:2025843-2025396 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 46 |
| Conread position: | 7-449 |
| Cow position: | chr23:4889926-4890369 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 140 |
| Conread position: | 7-449 |
| Cow position: | chr23:11780020-11780466 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 18 |
| Conread position: | 7-449 |
| Cow position: | chr23:20154980-20154540 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr23:22146071-22145619 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 138 |
| Conread position: | 9-173 |
| Cow position: | chr23:14963807-14963642 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 10-448 |
| Cow position: | chr23:15526820-15527263 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 10-449 |
| Cow position: | chr23:2759145-2759585 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 350 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 16-435 |
| Cow position: | chr23:23172027-23172449 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 72 |
| Conread position: | 16-449 |
| Cow position: | chr23:3879833-3879399 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 20 |
| Conread position: | 17-449 |
| Cow position: | chr23:4513729-4514170 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 131 |
| Conread position: | 17-449 |
| Cow position: | chr23:36030131-36029696 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 338 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 19 |
| Conread position: | 23-328 |
| Cow position: | chr23:14777700-14777401 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 225 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 36, 10 |
| Conread position: | 23-417 |
| Cow position: | chr23:1022702-1022289 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 120 |
| Conread position: | 23-448 |
| Cow position: | chr23:15218616-15218202 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 24-397 |
| Cow position: | chr23:14263129-14263493 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 269 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 91, 7 |
| Conread position: | 24-448 |
| Cow position: | chr23:7044918-7044513 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 12 |
| Conread position: | 25-449 |
| Cow position: | chr23:4639330-4638911 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 28 |
| Conread position: | 25-449 |
| Cow position: | chr23:22167905-22168327 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 24 |
| Conread position: | 27-444 |
| Cow position: | chr23:21822027-21821637 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 27 |
| Conread position: | 30-247 |
| Cow position: | chr23:27647409-27647620 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 160 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 10, 112 |
| Conread position: | 37-373 |
| Cow position: | chr23:2342354-2342687 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 67 |
| Conread position: | 53-354 |
| Cow position: | chr23:38579007-38579288 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 108, 59 |
| Conread position: | 72-451 |
| Cow position: | chr23:14556131-14556498 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 309, 53 |
| Conread position: | 93-449 |
| Cow position: | chr23:31164134-31164488 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 47 |
| Conread position: | 103-445 |
| Cow position: | chr23:26838161-26838500 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 237 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 85, 28 |
| Conread position: | 116-449 |
| Cow position: | chr23:1957520-1957847 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 24 |
Show alignments to all cow chromosomes.