Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-138 |
| Cow position: | chr28:5913180-5913040 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 24, 37 |
| Conread position: | 1-445 |
| Cow position: | chr28:21566737-21567172 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 143 |
| Conread position: | 2-435 |
| Cow position: | chr28:12648391-12647969 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 3-447 |
| Cow position: | chr28:24590137-24590590 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 3-449 |
| Cow position: | chr28:17389681-17390139 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 362 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 4-398 |
| Cow position: | chr28:17666021-17665627 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 314 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 35 |
| Conread position: | 4-449 |
| Cow position: | chr28:10615705-10615271 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 7 |
| Conread position: | 4-449 |
| Cow position: | chr28:34595519-34595968 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 16 |
| Conread position: | 5-179 |
| Cow position: | chr28:10496246-10496080 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-381 |
| Cow position: | chr28:22042001-22041617 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 142 |
| Conread position: | 5-394 |
| Cow position: | chr28:6786548-6786930 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 38 |
| Conread position: | 5-426 |
| Cow position: | chr28:7827272-7827691 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 186 |
| Conread position: | 5-435 |
| Cow position: | chr28:484309-483872 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-444 |
| Cow position: | chr28:24668895-24669328 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 38 |
| Conread position: | 5-447 |
| Cow position: | chr28:1459377-1459829 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-447 |
| Cow position: | chr28:2117265-2117728 (view UCSC Genome Browser custom track) |
| Alignm length: | 467 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 38 |
| Conread position: | 5-447 |
| Cow position: | chr28:8719674-8719224 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 363 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 38 |
| Conread position: | 5-450 |
| Cow position: | chr28:5750416-5749966 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 15 |
| Conread position: | 6-407 |
| Cow position: | chr28:29539831-29539437 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 7-435 |
| Cow position: | chr28:7741730-7742155 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 106 |
| Conread position: | 7-446 |
| Cow position: | chr28:33253594-33254047 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 79 |
| Conread position: | 7-447 |
| Cow position: | chr28:3190967-3190518 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 7-448 |
| Cow position: | chr28:15684746-15685201 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 36 |
| Conread position: | 7-448 |
| Cow position: | chr28:29821284-29821721 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 24 |
| Conread position: | 7-449 |
| Cow position: | chr28:1166596-1166157 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 22 |
| Conread position: | 7-449 |
| Cow position: | chr28:1506155-1506602 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 7-449 |
| Cow position: | chr28:2085747-2086201 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 7-449 |
| Cow position: | chr28:5938772-5939224 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-449 |
| Cow position: | chr28:13461264-13461704 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-449 |
| Cow position: | chr28:14704099-14703647 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 76 |
| Conread position: | 7-449 |
| Cow position: | chr28:22259863-22259418 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr28:32791093-32790663 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 31 |
| Conread position: | 8-312 |
| Cow position: | chr28:10460315-10460017 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 31, 12 |
| Conread position: | 8-445 |
| Cow position: | chr28:7003285-7003728 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 31 |
| Conread position: | 9-432 |
| Cow position: | chr28:20634772-20634351 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 279 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 73, 19 |
| Conread position: | 9-447 |
| Cow position: | chr28:26424959-26424527 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 11 |
| Conread position: | 10-441 |
| Cow position: | chr28:1386105-1385680 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 10 |
| Conread position: | 10-447 |
| Cow position: | chr28:12408934-12408493 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 19 |
| Conread position: | 12-427 |
| Cow position: | chr28:13604054-13604470 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 7 |
| Conread position: | 14-355 |
| Cow position: | chr28:8784618-8784954 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 237 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 79 |
| Conread position: | 16-312 |
| Cow position: | chr28:14752082-14752384 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 19 |
| Conread position: | 17-383 |
| Cow position: | chr28:9179914-9180279 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 129 |
| Conread position: | 17-405 |
| Cow position: | chr28:18146438-18146054 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 104 |
| Conread position: | 17-435 |
| Cow position: | chr28:6537513-6537088 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 17-449 |
| Cow position: | chr28:18519150-18518711 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 20-299 |
| Cow position: | chr28:9337221-9336948 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 26, 35 |
| Conread position: | 23-400 |
| Cow position: | chr28:10470973-10471356 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 18 |
| Conread position: | 23-447 |
| Cow position: | chr28:10580562-10580138 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 13 |
| Conread position: | 23-449 |
| Cow position: | chr28:8380352-8380773 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 101, 13 |
| Conread position: | 23-450 |
| Cow position: | chr28:5766035-5766468 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 28-342 |
| Cow position: | chr28:34565351-34565660 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 12, 62 |
| Conread position: | 28-352 |
| Cow position: | chr28:24884225-24884542 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 225 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 32-249 |
| Cow position: | chr28:15241359-15241145 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 83, 28 |
| Conread position: | 32-447 |
| Cow position: | chr28:5799605-5800026 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 111 |
| Conread position: | 37-389 |
| Cow position: | chr28:4846311-4845973 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 38-399 |
| Cow position: | chr28:5112804-5112438 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 251 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 105 |
| Conread position: | 38-449 |
| Cow position: | chr28:10646108-10645702 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 90 |
| Conread position: | 38-449 |
| Cow position: | chr28:12151651-12152062 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 104 |
| Conread position: | 44-179 |
| Cow position: | chr28:11510954-11510810 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 70, 106 |
| Conread position: | 53-449 |
| Cow position: | chr28:1216494-1216101 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 6 |
| Conread position: | 55-448 |
| Cow position: | chr28:33637879-33638279 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 88 |
| Conread position: | 67-450 |
| Cow position: | chr28:919191-918807 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 67-450 |
| Cow position: | chr28:934881-934499 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 254 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 5, 22 |
| Conread position: | 75-449 |
| Cow position: | chr28:24558963-24559336 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 95-449 |
| Cow position: | chr28:1813552-1813198 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 48 |
Show alignments to all cow chromosomes.