Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-444 |
| Cow position: | chr29:2747200-2746768 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 24 |
| Conread position: | 1-449 |
| Cow position: | chr29:36596825-36596374 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 46 |
| Conread position: | 4-445 |
| Cow position: | chr29:14587168-14587615 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-445 |
| Cow position: | chr29:19622032-19621576 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 4-449 |
| Cow position: | chr29:16023809-16024263 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 141 |
| Conread position: | 4-449 |
| Cow position: | chr29:40501752-40501307 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 49 |
| Conread position: | 4-449 |
| Cow position: | chr29:42803661-42804091 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 78 |
| Conread position: | 5-172 |
| Cow position: | chr29:35814724-35814550 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 13, 143 |
| Conread position: | 5-289 |
| Cow position: | chr29:6198507-6198213 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-296 |
| Cow position: | chr29:3328585-3328886 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-297 |
| Cow position: | chr29:42093011-42093313 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-326 |
| Cow position: | chr29:21425765-21425447 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 30 |
| Conread position: | 5-406 |
| Cow position: | chr29:30259281-30258893 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 47 |
| Conread position: | 5-435 |
| Cow position: | chr29:7845638-7846076 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-435 |
| Cow position: | chr29:13583330-13583767 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr29:15946564-15946147 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr29:27979674-27979235 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 93 |
| Conread position: | 5-439 |
| Cow position: | chr29:8664759-8665195 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 143 |
| Conread position: | 5-445 |
| Cow position: | chr29:31182654-31183097 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 92 |
| Conread position: | 5-447 |
| Cow position: | chr29:21431606-21431154 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 147 |
| Conread position: | 5-447 |
| Cow position: | chr29:27180507-27180055 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-447 |
| Cow position: | chr29:32558505-32558053 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 34 |
| Conread position: | 5-447 |
| Cow position: | chr29:36635138-36634685 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 195 |
| Conread position: | 5-449 |
| Cow position: | chr29:4633373-4632942 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 6-421 |
| Cow position: | chr29:5981458-5981049 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 139 |
| Conread position: | 6-422 |
| Cow position: | chr29:15997399-15996979 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 30 |
| Conread position: | 6-431 |
| Cow position: | chr29:647074-647488 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 33 |
| Conread position: | 6-447 |
| Cow position: | chr29:10023085-10022634 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 138 |
| Conread position: | 7-441 |
| Cow position: | chr29:5958842-5959267 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 43 |
| Conread position: | 7-445 |
| Cow position: | chr29:2840092-2839647 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-445 |
| Cow position: | chr29:5236267-5236717 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 143 |
| Conread position: | 7-449 |
| Cow position: | chr29:2465603-2465176 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 7-449 |
| Cow position: | chr29:2691418-2691862 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 31 |
| Conread position: | 7-449 |
| Cow position: | chr29:6264747-6264300 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 352 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 7-449 |
| Cow position: | chr29:19654880-19655318 (view UCSC Genome Browser custom track) |
| Alignm length: | 447 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 29 |
| Conread position: | 7-449 |
| Cow position: | chr29:26163583-26163133 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 355 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr29:38228231-38228677 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 13 |
| Conread position: | 7-449 |
| Cow position: | chr29:45460995-45461446 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-450 |
| Cow position: | chr29:39078454-39078010 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 347 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 8-180 |
| Cow position: | chr29:36320691-36320857 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 126 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 9-370 |
| Cow position: | chr29:12793489-12793841 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 252 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 10-447 |
| Cow position: | chr29:45205767-45206228 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 26 |
| Conread position: | 16-420 |
| Cow position: | chr29:27262455-27262041 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 130 |
| Conread position: | 17-133 |
| Cow position: | chr29:7429947-7429830 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 17-155 |
| Cow position: | chr29:9642526-9642384 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 23, 128 |
| Conread position: | 17-382 |
| Cow position: | chr29:29502998-29502626 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 131 |
| Conread position: | 17-435 |
| Cow position: | chr29:38207402-38206978 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 19 |
| Conread position: | 17-436 |
| Cow position: | chr29:34798547-34798124 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 19-352 |
| Cow position: | chr29:2146523-2146173 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 14, 36 |
| Conread position: | 19-451 |
| Cow position: | chr29:16166333-16165923 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 292 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 21, 49 |
| Conread position: | 23-444 |
| Cow position: | chr29:19888852-19889281 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 13 |
| Conread position: | 23-449 |
| Cow position: | chr29:2101106-2101539 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 119 |
| Conread position: | 24-449 |
| Cow position: | chr29:409976-409562 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 327 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 20 |
| Conread position: | 28-356 |
| Cow position: | chr29:38237248-38236927 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 12, 117 |
| Conread position: | 28-417 |
| Cow position: | chr29:6213798-6214168 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 12 |
| Conread position: | 31-435 |
| Cow position: | chr29:19953908-19954306 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 149, 117 |
| Conread position: | 32-179 |
| Cow position: | chr29:21518084-21517938 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 38-447 |
| Cow position: | chr29:13851590-13851180 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 106 |
| Conread position: | 41-447 |
| Cow position: | chr29:32287534-32287944 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 330 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 274 |
| Conread position: | 43-448 |
| Cow position: | chr29:37165381-37165782 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 101 |
| Conread position: | 69-258 |
| Cow position: | chr29:252050-252242 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 41, 77 |
| Conread position: | 70-390 |
| Cow position: | chr29:38619562-38619240 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 219 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 29, 75 |
| Conread position: | 74-429 |
| Cow position: | chr29:14112867-14113222 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 70 |
| Conread position: | 87-447 |
| Cow position: | chr29:16661342-16661694 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 97-314 |
| Cow position: | chr29:40446589-40446801 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 7, 28 |
| Conread position: | 103-344 |
| Cow position: | chr29:6568727-6568488 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 100, 37 |
| Conread position: | 104-449 |
| Cow position: | chr29:7429772-7429420 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 37 |
| Conread position: | 115-447 |
| Cow position: | chr29:9641423-9641087 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 116-435 |
| Cow position: | chr29:19526921-19526600 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 27 |
| Conread position: | 126-449 |
| Cow position: | chr29:10822542-10822223 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 223 |
Show alignments to all cow chromosomes.