Cow genome map
| Conread name: | Emb1-C0005218_C12 |
| Conread position: | 1-175 |
| Cow position: | chr4:28832519-28832691 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 17, 42 |
| Conread position: | 1-312 |
| Cow position: | chr4:4178219-4178529 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 222 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 16, 38 |
| Conread position: | 1-449 |
| Cow position: | chr4:20067757-20067308 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 343 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 96 |
| Conread position: | 3-205 |
| Cow position: | chr4:41428275-41428486 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 14, 143 |
| Conread position: | 3-281 |
| Cow position: | chr4:66101562-66101282 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 189 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 16, 138 |
| Conread position: | 3-435 |
| Cow position: | chr4:18337817-18338259 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 36 |
| Conread position: | 3-447 |
| Cow position: | chr4:6567351-6567796 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 14 |
| Conread position: | 4-435 |
| Cow position: | chr4:530374-530823 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 4-449 |
| Cow position: | chr4:67682164-67682616 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 35 |
| Conread position: | 5-177 |
| Cow position: | chr4:44924564-44924388 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 14, 126 |
| Conread position: | 5-204 |
| Cow position: | chr4:9647345-9647543 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-239 |
| Cow position: | chr4:19005340-19005103 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 14 |
| Conread position: | 5-406 |
| Cow position: | chr4:45106431-45106843 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 146 |
| Conread position: | 5-415 |
| Cow position: | chr4:54969699-54970091 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 117 |
| Conread position: | 5-433 |
| Cow position: | chr4:99245-98815 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 336 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 34 |
| Conread position: | 5-433 |
| Cow position: | chr4:41959866-41960302 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-435 |
| Cow position: | chr4:3126775-3127216 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 34 |
| Conread position: | 5-435 |
| Cow position: | chr4:5443861-5443420 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 145 |
| Conread position: | 5-435 |
| Cow position: | chr4:5881127-5881560 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 141 |
| Conread position: | 5-435 |
| Cow position: | chr4:9355347-9355784 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 146 |
| Conread position: | 5-435 |
| Cow position: | chr4:41955731-41956168 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 32 |
| Conread position: | 5-435 |
| Cow position: | chr4:47522326-47522754 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 144 |
| Conread position: | 5-441 |
| Cow position: | chr4:9847243-9846796 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 356 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 140 |
| Conread position: | 5-441 |
| Cow position: | chr4:60263189-60262754 (view UCSC Genome Browser custom track) |
| Alignm length: | 444 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 67 |
| Conread position: | 5-445 |
| Cow position: | chr4:160133-160571 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 342 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 5-445 |
| Cow position: | chr4:18423552-18423108 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 145 |
| Conread position: | 5-447 |
| Cow position: | chr4:1929670-1929225 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 34 |
| Conread position: | 7-441 |
| Cow position: | chr4:57984959-57985402 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-447 |
| Cow position: | chr4:25598518-25598069 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 7-448 |
| Cow position: | chr4:33071853-33071424 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 349 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 140 |
| Conread position: | 7-449 |
| Cow position: | chr4:356881-357324 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr4:10882522-10882967 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 46 |
| Conread position: | 7-449 |
| Cow position: | chr4:12588304-12588746 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 32 |
| Conread position: | 7-449 |
| Cow position: | chr4:13494303-13494751 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 346 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 32 |
| Conread position: | 7-449 |
| Cow position: | chr4:17924994-17924542 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 348 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 141 |
| Conread position: | 7-450 |
| Cow position: | chr4:36897347-36897796 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 357 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 137 |
| Conread position: | 8-304 |
| Cow position: | chr4:41191624-41191324 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 11 |
| Conread position: | 8-435 |
| Cow position: | chr4:44780246-44779815 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 12 |
| Conread position: | 8-447 |
| Cow position: | chr4:42405581-42406032 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 339 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 139 |
| Conread position: | 8-449 |
| Cow position: | chr4:16639591-16640029 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 359 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 8-449 |
| Cow position: | chr4:57957961-57958371 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 10, 35 |
| Conread position: | 10-444 |
| Cow position: | chr4:34178252-34177835 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 344 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 39 |
| Conread position: | 15-449 |
| Cow position: | chr4:13958158-13958590 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 5 |
| Conread position: | 16-435 |
| Cow position: | chr4:32213149-32213577 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 340 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 20 |
| Conread position: | 17-435 |
| Cow position: | chr4:38930378-38930791 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 17-449 |
| Cow position: | chr4:12240233-12239805 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 337 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 19 |
| Conread position: | 18-435 |
| Cow position: | chr4:26876793-26876383 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 20-404 |
| Cow position: | chr4:50806506-50806868 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 265 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 259, 8 |
| Conread position: | 22-179 |
| Cow position: | chr4:67351563-67351719 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 119 |
| Conread position: | 23-435 |
| Cow position: | chr4:33596524-33596925 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 97, 31 |
| Conread position: | 23-446 |
| Cow position: | chr4:22027452-22027038 (view UCSC Genome Browser custom track) |
| Alignm length: | 435 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 54 |
| Conread position: | 24-414 |
| Cow position: | chr4:31638929-31638542 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 87 |
| Conread position: | 25-356 |
| Cow position: | chr4:31564295-31563957 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 27-272 |
| Cow position: | chr4:46665527-46665775 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 13, 51 |
| Conread position: | 28-286 |
| Cow position: | chr4:52268786-52268525 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 12, 60 |
| Conread position: | 28-414 |
| Cow position: | chr4:14793449-14793830 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 269 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 146, 51 |
| Conread position: | 28-417 |
| Cow position: | chr4:52963128-52962760 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 272 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 12, 40 |
| Conread position: | 28-430 |
| Cow position: | chr4:46574080-46574478 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 12, 61 |
| Conread position: | 29-443 |
| Cow position: | chr4:182843-183265 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 277 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 34-444 |
| Cow position: | chr4:49716784-49717185 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 45 |
| Conread position: | 36-447 |
| Cow position: | chr4:6865504-6865091 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 110 |
| Conread position: | 37-449 |
| Cow position: | chr4:21359232-21359650 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 313 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 108 |
| Conread position: | 38-402 |
| Cow position: | chr4:51042283-51041920 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 103 |
| Conread position: | 39-447 |
| Cow position: | chr4:1952565-1952150 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 105 |
| Conread position: | 47-189 |
| Cow position: | chr4:58410723-58410864 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 8 |
| Conread position: | 53-447 |
| Cow position: | chr4:17502313-17501914 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 90 |
| Conread position: | 58-448 |
| Cow position: | chr4:27334954-27335355 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 85 |
| Conread position: | 60-435 |
| Cow position: | chr4:28653467-28653090 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 84 |
| Conread position: | 61-402 |
| Cow position: | chr4:45407992-45408340 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 65-449 |
| Cow position: | chr4:3356899-3356514 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 301 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 54 |
| Conread position: | 74-435 |
| Cow position: | chr4:604670-605035 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 11 |
| Conread position: | 74-445 |
| Cow position: | chr4:20236357-20235983 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 13 |
| Conread position: | 74-450 |
| Cow position: | chr4:50847858-50847482 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 252 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 41, 69 |
| Conread position: | 81-411 |
| Cow position: | chr4:952006-952319 (view UCSC Genome Browser custom track) |
| Alignm length: | 333 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 309, 35 |
| Conread position: | 81-411 |
| Cow position: | chr4:18475910-18475581 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 217 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 30, 7 |
Show alignments to all cow chromosomes.