Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-205
Cow position: chr6:48579787-48579574 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 156
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 20, 147

Conread position: 1-449
Cow position: chr6:10250402-10249948 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 369
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 143

Conread position: 1-449
Cow position: chr6:35419077-35418646 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 21

Conread position: 2-179
Cow position: chr6:13316257-13316079 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 147
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 38, 18

Conread position: 3-435
Cow position: chr6:17597105-17596650 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 36

Conread position: 3-449
Cow position: chr6:10610081-10610506 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 44

Conread position: 4-128
Cow position: chr6:58595844-58595717 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 104
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 35, 13

Conread position: 4-245
Cow position: chr6:11273690-11273455 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 173
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 31, 19

Conread position: 4-449
Cow position: chr6:39333660-39333212 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 32

Conread position: 5-168
Cow position: chr6:87851-88016 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 126
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 13, 34

Conread position: 5-177
Cow position: chr6:46573986-46574165 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 136
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 15, 143

Conread position: 5-202
Cow position: chr6:34196587-34196796 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 168
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 12, 39

Conread position: 5-228
Cow position: chr6:3784976-3785209 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 170
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 13, 146

Conread position: 5-275
Cow position: chr6:50645975-50645695 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 13, 143

Conread position: 5-307
Cow position: chr6:46603037-46602725 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 144

Conread position: 5-317
Cow position: chr6:28766834-28766512 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-320
Cow position: chr6:65897762-65897439 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 109

Conread position: 5-404
Cow position: chr6:33899041-33898663 (view UCSC Genome Browser custom track)
Alignm length: 404
Alignm identity: 276
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 12, 33

Conread position: 5-408
Cow position: chr6:13945118-13945529 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 5-411
Cow position: chr6:16053316-16053731 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 21

Conread position: 5-430
Cow position: chr6:12665110-12664680 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 332
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-435
Cow position: chr6:2375896-2376320 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 326
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 5-435
Cow position: chr6:2877478-2877038 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 143

Conread position: 5-435
Cow position: chr6:7140134-7139695 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr6:26669656-26669217 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-435
Cow position: chr6:28703505-28703064 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 145

Conread position: 5-435
Cow position: chr6:40379425-40378985 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-435
Cow position: chr6:45587157-45587593 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 146

Conread position: 5-441
Cow position: chr6:58601691-58602131 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 84

Conread position: 5-441
Cow position: chr6:66233017-66233451 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 5-445
Cow position: chr6:40316791-40317248 (view UCSC Genome Browser custom track)
Alignm length: 465
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 5-446
Cow position: chr6:44149342-44148893 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 144

Conread position: 5-447
Cow position: chr6:39910543-39910989 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr6:47047975-47047523 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 146

Conread position: 5-447
Cow position: chr6:59617319-59617748 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-448
Cow position: chr6:66745204-66745651 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 5-448
Cow position: chr6:67265095-67265542 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 5-449
Cow position: chr6:7178081-7177633 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 6-157
Cow position: chr6:60931897-60932053 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 125
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 12, 33

Conread position: 6-433
Cow position: chr6:21835964-21835553 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 33

Conread position: 6-435
Cow position: chr6:43618931-43619369 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 32

Conread position: 7-159
Cow position: chr6:15278605-15278449 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 130
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 32

Conread position: 7-177
Cow position: chr6:29312712-29312891 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 11, 143

Conread position: 7-179
Cow position: chr6:30677075-30676907 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 11, 32

Conread position: 7-247
Cow position: chr6:64717233-64717480 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 178
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 11, 138

Conread position: 7-306
Cow position: chr6:17047276-17047576 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 6

Conread position: 7-356
Cow position: chr6:66227148-66227479 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 234
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 268, 21

Conread position: 7-436
Cow position: chr6:55542046-55541609 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 31

Conread position: 7-445
Cow position: chr6:47042006-47041554 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 45

Conread position: 7-447
Cow position: chr6:51731291-51731738 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 142

Conread position: 7-449
Cow position: chr6:914844-915290 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 46

Conread position: 7-449
Cow position: chr6:1535365-1534921 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 141

Conread position: 7-449
Cow position: chr6:3487217-3486765 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr6:5948572-5948120 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr6:21973881-21974329 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr6:28170112-28170568 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 7-449
Cow position: chr6:30273684-30273234 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr6:35875501-35875051 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 358
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 145

Conread position: 7-449
Cow position: chr6:40553364-40552922 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 107

Conread position: 7-449
Cow position: chr6:40866113-40865667 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr6:43792361-43791909 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 141

Conread position: 7-449
Cow position: chr6:65842824-65843275 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 8-404
Cow position: chr6:33108231-33107840 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 278
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 19, 38

Conread position: 9-172
Cow position: chr6:65915526-65915685 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 130
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 95, 11

Conread position: 9-177
Cow position: chr6:58027887-58028057 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 143
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 9, 106

Conread position: 9-242
Cow position: chr6:13105273-13105519 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 183
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 30

Conread position: 9-399
Cow position: chr6:28134128-28134518 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 11

Conread position: 9-449
Cow position: chr6:15139962-15139514 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 134

Conread position: 9-450
Cow position: chr6:58065955-58066376 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 105, 11

Conread position: 10-449
Cow position: chr6:51715751-51716192 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 26

Conread position: 17-177
Cow position: chr6:9264312-9264476 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 22, 131

Conread position: 17-419
Cow position: chr6:66546711-66547105 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 75

Conread position: 17-435
Cow position: chr6:28490344-28489924 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 124

Conread position: 17-447
Cow position: chr6:44262246-44261822 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 109

Conread position: 17-449
Cow position: chr6:50382-49946 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 19

Conread position: 17-449
Cow position: chr6:34890899-34890467 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 19

Conread position: 17-449
Cow position: chr6:41228668-41229103 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 19

Conread position: 21-447
Cow position: chr6:13848306-13848724 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 300
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 20

Conread position: 23-258
Cow position: chr6:27471807-27472044 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 178
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 33, 13

Conread position: 23-261
Cow position: chr6:1098922-1098691 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 165
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 157, 74

Conread position: 23-433
Cow position: chr6:3150464-3150879 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 17

Conread position: 23-445
Cow position: chr6:8760069-8759642 (view UCSC Genome Browser custom track)
Alignm length: 430
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 23-449
Cow position: chr6:476772-477199 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 13

Conread position: 23-449
Cow position: chr6:703442-703871 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 13

Conread position: 23-449
Cow position: chr6:25792529-25792098 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 25-446
Cow position: chr6:64954048-64953647 (view UCSC Genome Browser custom track)
Alignm length: 426
Alignm identity: 276
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 171, 60

Conread position: 26-449
Cow position: chr6:1821389-1820969 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 115

Conread position: 27-375
Cow position: chr6:10339393-10339057 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 114

Conread position: 27-447
Cow position: chr6:25215453-25215875 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 92, 9

Conread position: 28-280
Cow position: chr6:66193286-66193035 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 181
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 166, 16

Conread position: 28-449
Cow position: chr6:15478409-15478831 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 7

Conread position: 28-449
Cow position: chr6:39955093-39955505 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 45, 8

Conread position: 32-407
Cow position: chr6:15891955-15891584 (view UCSC Genome Browser custom track)
Alignm length: 383
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 63

Conread position: 34-391
Cow position: chr6:20648845-20648494 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 233
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 70, 45

Conread position: 36-447
Cow position: chr6:69065424-69065819 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 258
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 209, 25

Conread position: 38-385
Cow position: chr6:58004487-58004832 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 230
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 88, 40

Conread position: 45-450
Cow position: chr6:47625313-47625722 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 69, 22

Conread position: 55-292
Cow position: chr6:3276107-3275867 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 64, 88

Conread position: 55-448
Cow position: chr6:50636133-50636529 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 125, 71

Conread position: 72-257
Cow position: chr6:16995677-16995866 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 50, 40

Conread position: 74-445
Cow position: chr6:16598894-16599271 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 75

Conread position: 85-447
Cow position: chr6:3571885-3572252 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 58

Conread position: 95-435
Cow position: chr6:13310074-13309733 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 30

Conread position: 103-449
Cow position: chr6:24240720-24241064 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 17

Conread position: 116-449
Cow position: chr6:184216-183883 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 135-449
Cow position: chr6:36528555-36528857 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 227
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 59, 32

Show alignments to all cow chromosomes.