Cow genome map
| Conread name: | Emb1-C0005218_C12 | 
| Conread position: | 1-205 | 
| Cow position: | chr6:48579787-48579574 (view UCSC Genome Browser custom track) | 
| Alignm length: | 215 | 
| Alignm identity: | 156 | 
| Alignm E-value: | 2e-29 | 
| Alignm gaps (pig, cow): | 20, 147 | 
| Conread position: | 1-449 | 
| Cow position: | chr6:10250402-10249948 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 369 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 143 | 
| Conread position: | 1-449 | 
| Cow position: | chr6:35419077-35418646 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 180, 21 | 
| Conread position: | 2-179 | 
| Cow position: | chr6:13316257-13316079 (view UCSC Genome Browser custom track) | 
| Alignm length: | 182 | 
| Alignm identity: | 147 | 
| Alignm E-value: | 6e-38 | 
| Alignm gaps (pig, cow): | 38, 18 | 
| Conread position: | 3-435 | 
| Cow position: | chr6:17597105-17596650 (view UCSC Genome Browser custom track) | 
| Alignm length: | 458 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 36 | 
| Conread position: | 3-449 | 
| Cow position: | chr6:10610081-10610506 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 9, 44 | 
| Conread position: | 4-128 | 
| Cow position: | chr6:58595844-58595717 (view UCSC Genome Browser custom track) | 
| Alignm length: | 129 | 
| Alignm identity: | 104 | 
| Alignm E-value: | 1e-24 | 
| Alignm gaps (pig, cow): | 35, 13 | 
| Conread position: | 4-245 | 
| Cow position: | chr6:11273690-11273455 (view UCSC Genome Browser custom track) | 
| Alignm length: | 245 | 
| Alignm identity: | 173 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 31, 19 | 
| Conread position: | 4-449 | 
| Cow position: | chr6:39333660-39333212 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 360 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 32 | 
| Conread position: | 5-168 | 
| Cow position: | chr6:87851-88016 (view UCSC Genome Browser custom track) | 
| Alignm length: | 169 | 
| Alignm identity: | 126 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 13, 34 | 
| Conread position: | 5-177 | 
| Cow position: | chr6:46573986-46574165 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 136 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 15, 143 | 
| Conread position: | 5-202 | 
| Cow position: | chr6:34196587-34196796 (view UCSC Genome Browser custom track) | 
| Alignm length: | 212 | 
| Alignm identity: | 168 | 
| Alignm E-value: | 7e-39 | 
| Alignm gaps (pig, cow): | 12, 39 | 
| Conread position: | 5-228 | 
| Cow position: | chr6:3784976-3785209 (view UCSC Genome Browser custom track) | 
| Alignm length: | 235 | 
| Alignm identity: | 170 | 
| Alignm E-value: | 3e-31 | 
| Alignm gaps (pig, cow): | 13, 146 | 
| Conread position: | 5-275 | 
| Cow position: | chr6:50645975-50645695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 282 | 
| Alignm identity: | 206 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 13, 143 | 
| Conread position: | 5-307 | 
| Cow position: | chr6:46603037-46602725 (view UCSC Genome Browser custom track) | 
| Alignm length: | 314 | 
| Alignm identity: | 232 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 144 | 
| Conread position: | 5-317 | 
| Cow position: | chr6:28766834-28766512 (view UCSC Genome Browser custom track) | 
| Alignm length: | 324 | 
| Alignm identity: | 243 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 143 | 
| Conread position: | 5-320 | 
| Cow position: | chr6:65897762-65897439 (view UCSC Genome Browser custom track) | 
| Alignm length: | 328 | 
| Alignm identity: | 247 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 109 | 
| Conread position: | 5-404 | 
| Cow position: | chr6:33899041-33898663 (view UCSC Genome Browser custom track) | 
| Alignm length: | 404 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 3e-40 | 
| Alignm gaps (pig, cow): | 12, 33 | 
| Conread position: | 5-408 | 
| Cow position: | chr6:13945118-13945529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 416 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 34 | 
| Conread position: | 5-411 | 
| Cow position: | chr6:16053316-16053731 (view UCSC Genome Browser custom track) | 
| Alignm length: | 420 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 21 | 
| Conread position: | 5-430 | 
| Cow position: | chr6:12665110-12664680 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 332 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 34 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:2375896-2376320 (view UCSC Genome Browser custom track) | 
| Alignm length: | 438 | 
| Alignm identity: | 326 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 48 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:2877478-2877038 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 143 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:7140134-7139695 (view UCSC Genome Browser custom track) | 
| Alignm length: | 444 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 34 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:26669656-26669217 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 34 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:28703505-28703064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 443 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 145 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:40379425-40378985 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 143 | 
| Conread position: | 5-435 | 
| Cow position: | chr6:45587157-45587593 (view UCSC Genome Browser custom track) | 
| Alignm length: | 442 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 146 | 
| Conread position: | 5-441 | 
| Cow position: | chr6:58601691-58602131 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 361 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 84 | 
| Conread position: | 5-441 | 
| Cow position: | chr6:66233017-66233451 (view UCSC Genome Browser custom track) | 
| Alignm length: | 445 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 34 | 
| Conread position: | 5-445 | 
| Cow position: | chr6:40316791-40317248 (view UCSC Genome Browser custom track) | 
| Alignm length: | 465 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 48 | 
| Conread position: | 5-446 | 
| Cow position: | chr6:44149342-44148893 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 144 | 
| Conread position: | 5-447 | 
| Cow position: | chr6:39910543-39910989 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 352 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 34 | 
| Conread position: | 5-447 | 
| Cow position: | chr6:47047975-47047523 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 15, 146 | 
| Conread position: | 5-447 | 
| Cow position: | chr6:59617319-59617748 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 353 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 143 | 
| Conread position: | 5-448 | 
| Cow position: | chr6:66745204-66745651 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 321 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 34 | 
| Conread position: | 5-448 | 
| Cow position: | chr6:67265095-67265542 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 34 | 
| Conread position: | 5-449 | 
| Cow position: | chr6:7178081-7177633 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 142 | 
| Conread position: | 6-157 | 
| Cow position: | chr6:60931897-60932053 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 125 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 12, 33 | 
| Conread position: | 6-433 | 
| Cow position: | chr6:21835964-21835553 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 12, 33 | 
| Conread position: | 6-435 | 
| Cow position: | chr6:43618931-43619369 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 341 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 18, 32 | 
| Conread position: | 7-159 | 
| Cow position: | chr6:15278605-15278449 (view UCSC Genome Browser custom track) | 
| Alignm length: | 159 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 11, 32 | 
| Conread position: | 7-177 | 
| Cow position: | chr6:29312712-29312891 (view UCSC Genome Browser custom track) | 
| Alignm length: | 181 | 
| Alignm identity: | 138 | 
| Alignm E-value: | 6e-28 | 
| Alignm gaps (pig, cow): | 11, 143 | 
| Conread position: | 7-179 | 
| Cow position: | chr6:30677075-30676907 (view UCSC Genome Browser custom track) | 
| Alignm length: | 176 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 1e-22 | 
| Alignm gaps (pig, cow): | 11, 32 | 
| Conread position: | 7-247 | 
| Cow position: | chr6:64717233-64717480 (view UCSC Genome Browser custom track) | 
| Alignm length: | 250 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 4e-33 | 
| Alignm gaps (pig, cow): | 11, 138 | 
| Conread position: | 7-306 | 
| Cow position: | chr6:17047276-17047576 (view UCSC Genome Browser custom track) | 
| Alignm length: | 305 | 
| Alignm identity: | 221 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 6 | 
| Conread position: | 7-356 | 
| Cow position: | chr6:66227148-66227479 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 268, 21 | 
| Conread position: | 7-436 | 
| Cow position: | chr6:55542046-55541609 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 31 | 
| Conread position: | 7-445 | 
| Cow position: | chr6:47042006-47041554 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 346 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 45 | 
| Conread position: | 7-447 | 
| Cow position: | chr6:51731291-51731738 (view UCSC Genome Browser custom track) | 
| Alignm length: | 451 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 142 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:914844-915290 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 347 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 46 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:1535365-1534921 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 337 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 141 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:3487217-3486765 (view UCSC Genome Browser custom track) | 
| Alignm length: | 457 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 138 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:5948572-5948120 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 356 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 138 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:21973881-21974329 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 342 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 32 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:28170112-28170568 (view UCSC Genome Browser custom track) | 
| Alignm length: | 461 | 
| Alignm identity: | 345 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 142 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:30273684-30273234 (view UCSC Genome Browser custom track) | 
| Alignm length: | 453 | 
| Alignm identity: | 354 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 32 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:35875501-35875051 (view UCSC Genome Browser custom track) | 
| Alignm length: | 459 | 
| Alignm identity: | 358 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 145 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:40553364-40552922 (view UCSC Genome Browser custom track) | 
| Alignm length: | 452 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 107 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:40866113-40865667 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 138 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:43792361-43791909 (view UCSC Genome Browser custom track) | 
| Alignm length: | 455 | 
| Alignm identity: | 343 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 141 | 
| Conread position: | 7-449 | 
| Cow position: | chr6:65842824-65843275 (view UCSC Genome Browser custom track) | 
| Alignm length: | 454 | 
| Alignm identity: | 349 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 32 | 
| Conread position: | 8-404 | 
| Cow position: | chr6:33108231-33107840 (view UCSC Genome Browser custom track) | 
| Alignm length: | 412 | 
| Alignm identity: | 278 | 
| Alignm E-value: | 5e-36 | 
| Alignm gaps (pig, cow): | 19, 38 | 
| Conread position: | 9-172 | 
| Cow position: | chr6:65915526-65915685 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 130 | 
| Alignm E-value: | 2e-28 | 
| Alignm gaps (pig, cow): | 95, 11 | 
| Conread position: | 9-177 | 
| Cow position: | chr6:58027887-58028057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 180 | 
| Alignm identity: | 143 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 9, 106 | 
| Conread position: | 9-242 | 
| Cow position: | chr6:13105273-13105519 (view UCSC Genome Browser custom track) | 
| Alignm length: | 251 | 
| Alignm identity: | 183 | 
| Alignm E-value: | 3e-30 | 
| Alignm gaps (pig, cow): | 9, 30 | 
| Conread position: | 9-399 | 
| Cow position: | chr6:28134128-28134518 (view UCSC Genome Browser custom track) | 
| Alignm length: | 399 | 
| Alignm identity: | 318 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 31, 11 | 
| Conread position: | 9-449 | 
| Cow position: | chr6:15139962-15139514 (view UCSC Genome Browser custom track) | 
| Alignm length: | 450 | 
| Alignm identity: | 351 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 11, 134 | 
| Conread position: | 9-450 | 
| Cow position: | chr6:58065955-58066376 (view UCSC Genome Browser custom track) | 
| Alignm length: | 446 | 
| Alignm identity: | 333 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 105, 11 | 
| Conread position: | 10-449 | 
| Cow position: | chr6:51715751-51716192 (view UCSC Genome Browser custom track) | 
| Alignm length: | 447 | 
| Alignm identity: | 340 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 109, 26 | 
| Conread position: | 17-177 | 
| Cow position: | chr6:9264312-9264476 (view UCSC Genome Browser custom track) | 
| Alignm length: | 166 | 
| Alignm identity: | 124 | 
| Alignm E-value: | 5e-25 | 
| Alignm gaps (pig, cow): | 22, 131 | 
| Conread position: | 17-419 | 
| Cow position: | chr6:66546711-66547105 (view UCSC Genome Browser custom track) | 
| Alignm length: | 406 | 
| Alignm identity: | 301 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 19, 75 | 
| Conread position: | 17-435 | 
| Cow position: | chr6:28490344-28489924 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 327 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 22, 124 | 
| Conread position: | 17-447 | 
| Cow position: | chr6:44262246-44261822 (view UCSC Genome Browser custom track) | 
| Alignm length: | 436 | 
| Alignm identity: | 339 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 23, 109 | 
| Conread position: | 17-449 | 
| Cow position: | chr6:50382-49946 (view UCSC Genome Browser custom track) | 
| Alignm length: | 441 | 
| Alignm identity: | 334 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 40, 19 | 
| Conread position: | 17-449 | 
| Cow position: | chr6:34890899-34890467 (view UCSC Genome Browser custom track) | 
| Alignm length: | 439 | 
| Alignm identity: | 344 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 95, 19 | 
| Conread position: | 17-449 | 
| Cow position: | chr6:41228668-41229103 (view UCSC Genome Browser custom track) | 
| Alignm length: | 440 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 143, 19 | 
| Conread position: | 21-447 | 
| Cow position: | chr6:13848306-13848724 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 300 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 165, 20 | 
| Conread position: | 23-258 | 
| Cow position: | chr6:27471807-27472044 (view UCSC Genome Browser custom track) | 
| Alignm length: | 241 | 
| Alignm identity: | 178 | 
| Alignm E-value: | 2e-38 | 
| Alignm gaps (pig, cow): | 33, 13 | 
| Conread position: | 23-261 | 
| Cow position: | chr6:1098922-1098691 (view UCSC Genome Browser custom track) | 
| Alignm length: | 243 | 
| Alignm identity: | 165 | 
| Alignm E-value: | 3e-21 | 
| Alignm gaps (pig, cow): | 157, 74 | 
| Conread position: | 23-433 | 
| Cow position: | chr6:3150464-3150879 (view UCSC Genome Browser custom track) | 
| Alignm length: | 421 | 
| Alignm identity: | 324 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 24, 17 | 
| Conread position: | 23-445 | 
| Cow position: | chr6:8760069-8759642 (view UCSC Genome Browser custom track) | 
| Alignm length: | 430 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 119 | 
| Conread position: | 23-449 | 
| Cow position: | chr6:476772-477199 (view UCSC Genome Browser custom track) | 
| Alignm length: | 434 | 
| Alignm identity: | 320 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 81, 13 | 
| Conread position: | 23-449 | 
| Cow position: | chr6:703442-703871 (view UCSC Genome Browser custom track) | 
| Alignm length: | 432 | 
| Alignm identity: | 335 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 21, 13 | 
| Conread position: | 23-449 | 
| Cow position: | chr6:25792529-25792098 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 338 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 17, 119 | 
| Conread position: | 25-446 | 
| Cow position: | chr6:64954048-64953647 (view UCSC Genome Browser custom track) | 
| Alignm length: | 426 | 
| Alignm identity: | 276 | 
| Alignm E-value: | 8e-30 | 
| Alignm gaps (pig, cow): | 171, 60 | 
| Conread position: | 26-449 | 
| Cow position: | chr6:1821389-1820969 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 115 | 
| Conread position: | 27-375 | 
| Cow position: | chr6:10339393-10339057 (view UCSC Genome Browser custom track) | 
| Alignm length: | 353 | 
| Alignm identity: | 282 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 13, 114 | 
| Conread position: | 27-447 | 
| Cow position: | chr6:25215453-25215875 (view UCSC Genome Browser custom track) | 
| Alignm length: | 428 | 
| Alignm identity: | 331 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 92, 9 | 
| Conread position: | 28-280 | 
| Cow position: | chr6:66193286-66193035 (view UCSC Genome Browser custom track) | 
| Alignm length: | 261 | 
| Alignm identity: | 181 | 
| Alignm E-value: | 5e-26 | 
| Alignm gaps (pig, cow): | 166, 16 | 
| Conread position: | 28-449 | 
| Cow position: | chr6:15478409-15478831 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 319 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 75, 7 | 
| Conread position: | 28-449 | 
| Cow position: | chr6:39955093-39955505 (view UCSC Genome Browser custom track) | 
| Alignm length: | 429 | 
| Alignm identity: | 292 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 45, 8 | 
| Conread position: | 32-407 | 
| Cow position: | chr6:15891955-15891584 (view UCSC Genome Browser custom track) | 
| Alignm length: | 383 | 
| Alignm identity: | 265 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 96, 63 | 
| Conread position: | 34-391 | 
| Cow position: | chr6:20648845-20648494 (view UCSC Genome Browser custom track) | 
| Alignm length: | 365 | 
| Alignm identity: | 233 | 
| Alignm E-value: | 1e-21 | 
| Alignm gaps (pig, cow): | 70, 45 | 
| Conread position: | 36-447 | 
| Cow position: | chr6:69065424-69065819 (view UCSC Genome Browser custom track) | 
| Alignm length: | 414 | 
| Alignm identity: | 258 | 
| Alignm E-value: | 4e-23 | 
| Alignm gaps (pig, cow): | 209, 25 | 
| Conread position: | 38-385 | 
| Cow position: | chr6:58004487-58004832 (view UCSC Genome Browser custom track) | 
| Alignm length: | 352 | 
| Alignm identity: | 230 | 
| Alignm E-value: | 1e-32 | 
| Alignm gaps (pig, cow): | 88, 40 | 
| Conread position: | 45-450 | 
| Cow position: | chr6:47625313-47625722 (view UCSC Genome Browser custom track) | 
| Alignm length: | 413 | 
| Alignm identity: | 325 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 69, 22 | 
| Conread position: | 55-292 | 
| Cow position: | chr6:3276107-3275867 (view UCSC Genome Browser custom track) | 
| Alignm length: | 244 | 
| Alignm identity: | 184 | 
| Alignm E-value: | 2.99878e-43 | 
| Alignm gaps (pig, cow): | 64, 88 | 
| Conread position: | 55-448 | 
| Cow position: | chr6:50636133-50636529 (view UCSC Genome Browser custom track) | 
| Alignm length: | 402 | 
| Alignm identity: | 304 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 125, 71 | 
| Conread position: | 72-257 | 
| Cow position: | chr6:16995677-16995866 (view UCSC Genome Browser custom track) | 
| Alignm length: | 192 | 
| Alignm identity: | 142 | 
| Alignm E-value: | 2e-27 | 
| Alignm gaps (pig, cow): | 50, 40 | 
| Conread position: | 74-445 | 
| Cow position: | chr6:16598894-16599271 (view UCSC Genome Browser custom track) | 
| Alignm length: | 385 | 
| Alignm identity: | 283 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 33, 75 | 
| Conread position: | 85-447 | 
| Cow position: | chr6:3571885-3572252 (view UCSC Genome Browser custom track) | 
| Alignm length: | 369 | 
| Alignm identity: | 290 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 27, 58 | 
| Conread position: | 95-435 | 
| Cow position: | chr6:13310074-13309733 (view UCSC Genome Browser custom track) | 
| Alignm length: | 345 | 
| Alignm identity: | 271 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 14, 30 | 
| Conread position: | 103-449 | 
| Cow position: | chr6:24240720-24241064 (view UCSC Genome Browser custom track) | 
| Alignm length: | 350 | 
| Alignm identity: | 274 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 76, 17 | 
| Conread position: | 116-449 | 
| Cow position: | chr6:184216-183883 (view UCSC Genome Browser custom track) | 
| Alignm length: | 336 | 
| Alignm identity: | 264 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 63, 24 | 
| Conread position: | 135-449 | 
| Cow position: | chr6:36528555-36528857 (view UCSC Genome Browser custom track) | 
| Alignm length: | 317 | 
| Alignm identity: | 227 | 
| Alignm E-value: | 1.4013e-45 | 
| Alignm gaps (pig, cow): | 59, 32 | 
Show alignments to all cow chromosomes.
