Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-243
Cow position: chr7:40320484-40320723 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 42

Conread position: 1-270
Cow position: chr7:59029728-59029990 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 181
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 78, 112

Conread position: 1-276
Cow position: chr7:20533242-20533517 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 203
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 17, 143

Conread position: 1-283
Cow position: chr7:4093925-4093646 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 19, 38

Conread position: 1-411
Cow position: chr7:25420001-25420414 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 280
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 17, 144

Conread position: 3-425
Cow position: chr7:29471763-29472190 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 40

Conread position: 3-447
Cow position: chr7:21126368-21125931 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 26

Conread position: 3-449
Cow position: chr7:18445452-18445006 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 16

Conread position: 3-452
Cow position: chr7:996051-996491 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 365
Alignm E-value: 0
Alignm gaps (pig, cow): 122, 17

Conread position: 4-402
Cow position: chr7:1371345-1370943 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 115

Conread position: 4-450
Cow position: chr7:1609343-1608886 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 155

Conread position: 5-174
Cow position: chr7:11447865-11448042 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 135
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 13, 34

Conread position: 5-179
Cow position: chr7:19990316-19990495 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 5, 16

Conread position: 5-201
Cow position: chr7:34546661-34546863 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 151
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 139

Conread position: 5-247
Cow position: chr7:30303248-30303498 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 176
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 12, 34

Conread position: 5-263
Cow position: chr7:66036468-66036735 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 191
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 146

Conread position: 5-307
Cow position: chr7:1452943-1453251 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 5-320
Cow position: chr7:24878581-24878264 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-324
Cow position: chr7:40268672-40268360 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 16, 109

Conread position: 5-375
Cow position: chr7:3299869-3299492 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-419
Cow position: chr7:27100990-27100569 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-430
Cow position: chr7:25136152-25136577 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 287
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 12, 28

Conread position: 5-432
Cow position: chr7:58994887-58995286 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 34

Conread position: 5-432
Cow position: chr7:67495404-67495830 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 319
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 31

Conread position: 5-434
Cow position: chr7:41874971-41874554 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr7:6721437-6721876 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr7:20774034-20773605 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 90

Conread position: 5-445
Cow position: chr7:62445847-62445406 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 114

Conread position: 5-445
Cow position: chr7:67489994-67490427 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 39

Conread position: 5-447
Cow position: chr7:546144-546584 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 5-447
Cow position: chr7:5261618-5261174 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 356
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr7:14214068-14213634 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr7:25440800-25441245 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr7:49829028-49828588 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 13

Conread position: 5-447
Cow position: chr7:52763582-52764033 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 5-447
Cow position: chr7:55041190-55040738 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-448
Cow position: chr7:33332861-33333312 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 113

Conread position: 5-449
Cow position: chr7:39097246-39096792 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 364
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 140

Conread position: 5-449
Cow position: chr7:59680150-59680597 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 361
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 70

Conread position: 5-449
Cow position: chr7:59685111-59685562 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 38

Conread position: 5-449
Cow position: chr7:67813802-67814224 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 18, 31

Conread position: 5-450
Cow position: chr7:21311748-21312194 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 366
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 142

Conread position: 6-356
Cow position: chr7:26852751-26853093 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 243
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 12, 33

Conread position: 6-432
Cow position: chr7:20824626-20825040 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 136

Conread position: 6-444
Cow position: chr7:58337731-58337302 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 7

Conread position: 6-449
Cow position: chr7:3156769-3157224 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 142

Conread position: 7-269
Cow position: chr7:541666-541407 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 211
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 10, 37

Conread position: 7-315
Cow position: chr7:66906024-66906343 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 84

Conread position: 7-445
Cow position: chr7:13532604-13532167 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 102

Conread position: 7-448
Cow position: chr7:55536624-55536178 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 57

Conread position: 7-449
Cow position: chr7:444962-444509 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 46

Conread position: 7-449
Cow position: chr7:5308813-5308357 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 83

Conread position: 7-449
Cow position: chr7:10430121-10429675 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr7:14138293-14137844 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 64

Conread position: 7-449
Cow position: chr7:21233706-21233256 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr7:34487216-34487663 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr7:38398117-38398567 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 141

Conread position: 7-449
Cow position: chr7:39793168-39793606 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-450
Cow position: chr7:24807171-24806734 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 172, 21

Conread position: 7-450
Cow position: chr7:27788250-27788706 (view UCSC Genome Browser custom track)
Alignm length: 462
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 8-429
Cow position: chr7:67429878-67430295 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 12

Conread position: 9-387
Cow position: chr7:60856749-60856383 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 302
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 13

Conread position: 10-242
Cow position: chr7:5663874-5664110 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 185
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 44, 10

Conread position: 14-257
Cow position: chr7:25251511-25251766 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 189
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 64, 191

Conread position: 16-447
Cow position: chr7:42871459-42871890 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 24

Conread position: 16-450
Cow position: chr7:54649210-54649651 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 33, 20

Conread position: 17-179
Cow position: chr7:49730513-49730681 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 140
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 131

Conread position: 17-414
Cow position: chr7:58376572-58376195 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 0

Conread position: 18-407
Cow position: chr7:43871816-43872200 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 264
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 22, 121

Conread position: 20-179
Cow position: chr7:34417164-34417001 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 139
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 17, 125

Conread position: 20-279
Cow position: chr7:4690625-4690877 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 181
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 27

Conread position: 22-428
Cow position: chr7:50039152-50038748 (view UCSC Genome Browser custom track)
Alignm length: 414
Alignm identity: 263
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 17, 46

Conread position: 23-433
Cow position: chr7:6629981-6629565 (view UCSC Genome Browser custom track)
Alignm length: 421
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 13

Conread position: 23-444
Cow position: chr7:51015582-51015986 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 13

Conread position: 23-445
Cow position: chr7:63387067-63387479 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 31, 13

Conread position: 23-449
Cow position: chr7:526286-526696 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 310
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 119

Conread position: 23-449
Cow position: chr7:24934233-24933809 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 341
Alignm E-value: 0
Alignm gaps (pig, cow): 89, 17

Conread position: 26-287
Cow position: chr7:48635746-48636002 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 14, 52

Conread position: 26-449
Cow position: chr7:61578821-61579251 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 120

Conread position: 28-449
Cow position: chr7:54291515-54291930 (view UCSC Genome Browser custom track)
Alignm length: 428
Alignm identity: 262
Alignm E-value: 9e-21
Alignm gaps (pig, cow): 87, 13

Conread position: 34-173
Cow position: chr7:14695364-14695500 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 106
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 78, 0

Conread position: 34-408
Cow position: chr7:22187273-22186907 (view UCSC Genome Browser custom track)
Alignm length: 379
Alignm identity: 249
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 55, 40

Conread position: 36-411
Cow position: chr7:57084268-57084637 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 260
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 91, 72

Conread position: 36-445
Cow position: chr7:47974966-47974552 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 294
Alignm E-value: 0
Alignm gaps (pig, cow): 96, 105

Conread position: 36-447
Cow position: chr7:54581188-54581605 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 143, 17

Conread position: 38-242
Cow position: chr7:13575631-13575840 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 159
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 35, 29

Conread position: 38-449
Cow position: chr7:64239657-64239242 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 320
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 10

Conread position: 49-449
Cow position: chr7:65872257-65871860 (view UCSC Genome Browser custom track)
Alignm length: 406
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 71, 15

Conread position: 64-449
Cow position: chr7:61809370-61809758 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 14

Conread position: 72-450
Cow position: chr7:46747345-46747741 (view UCSC Genome Browser custom track)
Alignm length: 399
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 47

Conread position: 95-433
Cow position: chr7:6628008-6627670 (view UCSC Genome Browser custom track)
Alignm length: 343
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 28

Conread position: 105-411
Cow position: chr7:44216140-44216439 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 206
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 9, 39

Conread position: 116-337
Cow position: chr7:58350576-58350360 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 150
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 24

Conread position: 116-435
Cow position: chr7:43396998-43396677 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 24

Conread position: 118-435
Cow position: chr7:11462722-11462403 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 23

Conread position: 120-445
Cow position: chr7:3126108-3126434 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 256
Alignm E-value: 0
Alignm gaps (pig, cow): 58, 20

Conread position: 120-447
Cow position: chr7:23250039-23250368 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 257
Alignm E-value: 0
Alignm gaps (pig, cow): 59, 23

Conread position: 130-435
Cow position: chr7:66070697-66070394 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 13

Show alignments to all cow chromosomes.