Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-243
Cow position: chr8:40891995-40891754 (view UCSC Genome Browser custom track)
Alignm length: 251
Alignm identity: 187
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 17, 42

Conread position: 1-245
Cow position: chr8:31212728-31212484 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 171
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 8, 67

Conread position: 1-411
Cow position: chr8:21584675-21585087 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 183, 19

Conread position: 1-449
Cow position: chr8:21230559-21231020 (view UCSC Genome Browser custom track)
Alignm length: 466
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 38

Conread position: 2-417
Cow position: chr8:21205065-21205465 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 41

Conread position: 2-449
Cow position: chr8:24914826-24914384 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 21

Conread position: 3-210
Cow position: chr8:1118008-1118215 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 143
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 37, 19

Conread position: 3-447
Cow position: chr8:37932576-37933030 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 148

Conread position: 4-422
Cow position: chr8:23772127-23772548 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 141

Conread position: 4-445
Cow position: chr8:51507347-51506917 (view UCSC Genome Browser custom track)
Alignm length: 450
Alignm identity: 296
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 32, 16

Conread position: 5-177
Cow position: chr8:6064300-6064121 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 13, 146

Conread position: 5-248
Cow position: chr8:27579882-27580135 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 186
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 34

Conread position: 5-257
Cow position: chr8:22129059-22129300 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 185
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 13, 34

Conread position: 5-266
Cow position: chr8:1152815-1152537 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 13, 34

Conread position: 5-296
Cow position: chr8:49697505-49697210 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 90

Conread position: 5-311
Cow position: chr8:47454112-47453800 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 123

Conread position: 5-342
Cow position: chr8:37654376-37654029 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 146

Conread position: 5-363
Cow position: chr8:31984615-31984984 (view UCSC Genome Browser custom track)
Alignm length: 375
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-433
Cow position: chr8:11824380-11824814 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 48

Conread position: 5-433
Cow position: chr8:14631181-14630743 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 5-433
Cow position: chr8:21157305-21156869 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-435
Cow position: chr8:9736727-9737168 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 5-435
Cow position: chr8:25377469-25377899 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 13

Conread position: 5-435
Cow position: chr8:34349158-34349593 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 338
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 33

Conread position: 5-435
Cow position: chr8:37656073-37655633 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 146

Conread position: 5-444
Cow position: chr8:23135123-23134670 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 113

Conread position: 5-444
Cow position: chr8:32630550-32630102 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-445
Cow position: chr8:47075644-47076085 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 140

Conread position: 5-447
Cow position: chr8:1347768-1347316 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr8:2887234-2887686 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 145

Conread position: 5-447
Cow position: chr8:32436599-32436145 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-447
Cow position: chr8:45145823-45145370 (view UCSC Genome Browser custom track)
Alignm length: 467
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 35

Conread position: 5-447
Cow position: chr8:58185104-58184681 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 37

Conread position: 5-448
Cow position: chr8:32041276-32040827 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-449
Cow position: chr8:11803309-11803748 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 5-449
Cow position: chr8:41644190-41643750 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 373
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 29

Conread position: 5-449
Cow position: chr8:42158510-42158082 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 38

Conread position: 5-449
Cow position: chr8:47674331-47674772 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 140

Conread position: 5-449
Cow position: chr8:53427980-53428424 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 107

Conread position: 5-450
Cow position: chr8:11525202-11525627 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 193, 23

Conread position: 6-310
Cow position: chr8:20135952-20135649 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 108, 14

Conread position: 7-256
Cow position: chr8:46051668-46051929 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 197
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 11, 142

Conread position: 7-436
Cow position: chr8:19051937-19052375 (view UCSC Genome Browser custom track)
Alignm length: 445
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 140

Conread position: 7-445
Cow position: chr8:36635018-36634576 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 36

Conread position: 7-448
Cow position: chr8:3855538-3855089 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-448
Cow position: chr8:14927394-14926949 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 110

Conread position: 7-448
Cow position: chr8:39194729-39194278 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-449
Cow position: chr8:2169034-2168584 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 139

Conread position: 7-449
Cow position: chr8:3786126-3786566 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr8:7162385-7162833 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr8:8400625-8400168 (view UCSC Genome Browser custom track)
Alignm length: 474
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 32

Conread position: 7-449
Cow position: chr8:32318063-32317620 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 350
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-449
Cow position: chr8:47660831-47660385 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 31

Conread position: 7-453
Cow position: chr8:4687886-4688340 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 141

Conread position: 8-393
Cow position: chr8:28878508-28878890 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 12

Conread position: 9-138
Cow position: chr8:30486884-30486753 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 111
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 38, 13

Conread position: 9-412
Cow position: chr8:8911971-8912380 (view UCSC Genome Browser custom track)
Alignm length: 415
Alignm identity: 311
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 29

Conread position: 9-449
Cow position: chr8:50929619-50929169 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 12

Conread position: 9-449
Cow position: chr8:60061891-60062345 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 30

Conread position: 10-449
Cow position: chr8:12450528-12450978 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 141

Conread position: 10-449
Cow position: chr8:33589882-33590319 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 26

Conread position: 10-450
Cow position: chr8:10742156-10741708 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 40

Conread position: 11-449
Cow position: chr8:3748712-3748263 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 134

Conread position: 16-449
Cow position: chr8:42747289-42746857 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 167, 20

Conread position: 17-173
Cow position: chr8:38605709-38605554 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 137
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 95, 23

Conread position: 17-338
Cow position: chr8:51857483-51857792 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 251
Alignm E-value: 0
Alignm gaps (pig, cow): 182, 23

Conread position: 17-410
Cow position: chr8:51666317-51665917 (view UCSC Genome Browser custom track)
Alignm length: 408
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 84, 19

Conread position: 17-411
Cow position: chr8:45184918-45185301 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 281
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 21, 69

Conread position: 17-447
Cow position: chr8:42418929-42418490 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 321
Alignm E-value: 0
Alignm gaps (pig, cow): 177, 19

Conread position: 17-449
Cow position: chr8:6764790-6764356 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 336
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 126

Conread position: 17-449
Cow position: chr8:29008132-29008554 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 98

Conread position: 17-449
Cow position: chr8:47887368-47887780 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 0

Conread position: 20-449
Cow position: chr8:50358791-50358361 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 291
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 20, 8

Conread position: 23-435
Cow position: chr8:14255689-14256105 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 13

Conread position: 23-449
Cow position: chr8:46218242-46217818 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 315
Alignm E-value: 0
Alignm gaps (pig, cow): 161, 13

Conread position: 25-434
Cow position: chr8:18054245-18054644 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 279
Alignm E-value: 0
Alignm gaps (pig, cow): 107, 11

Conread position: 25-449
Cow position: chr8:14590372-14589941 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 117

Conread position: 26-449
Cow position: chr8:42469183-42469607 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 61

Conread position: 26-449
Cow position: chr8:59261431-59261012 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 34

Conread position: 27-447
Cow position: chr8:39819959-39820386 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 121

Conread position: 28-422
Cow position: chr8:42656475-42656083 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 8

Conread position: 28-444
Cow position: chr8:44700501-44700913 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 117

Conread position: 28-449
Cow position: chr8:34109386-34109814 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 6

Conread position: 33-364
Cow position: chr8:42579066-42578738 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 81, 99

Conread position: 36-290
Cow position: chr8:41945411-41945645 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 190
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 78, 107

Conread position: 37-449
Cow position: chr8:50960086-50959677 (view UCSC Genome Browser custom track)
Alignm length: 419
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 83, 38

Conread position: 38-417
Cow position: chr8:14583453-14583091 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 256
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 77, 101

Conread position: 38-453
Cow position: chr8:41740278-41740673 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 353, 92

Conread position: 39-402
Cow position: chr8:17312578-17312943 (view UCSC Genome Browser custom track)
Alignm length: 372
Alignm identity: 275
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 27

Conread position: 40-441
Cow position: chr8:56884057-56884455 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 28

Conread position: 44-449
Cow position: chr8:45794226-45793818 (view UCSC Genome Browser custom track)
Alignm length: 413
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 99

Conread position: 44-449
Cow position: chr8:54017018-54016615 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 10

Conread position: 48-202
Cow position: chr8:48103229-48103380 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 126
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 70, 95

Conread position: 50-435
Cow position: chr8:46454269-46453909 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 270
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 60, 93

Conread position: 54-447
Cow position: chr8:35470838-35471236 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 89

Conread position: 91-435
Cow position: chr8:47490061-47490401 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 53

Conread position: 93-306
Cow position: chr8:49296596-49296393 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 169
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 19, 50

Conread position: 95-346
Cow position: chr8:10365333-10365087 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 174
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 8, 26

Conread position: 97-366
Cow position: chr8:44956-44689 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 207
Alignm E-value: 0
Alignm gaps (pig, cow): 97, 15

Conread position: 104-431
Cow position: chr8:18292391-18292064 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 232
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 11, 28

Conread position: 111-449
Cow position: chr8:12313810-12313467 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 29

Conread position: 133-449
Cow position: chr8:19332192-19332509 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 7

Conread position: 140-450
Cow position: chr8:25412246-25412555 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 234
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 73, 41

Conread position: 144-435
Cow position: chr8:21250854-21251148 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 0

Conread position: 146-413
Cow position: chr8:13316256-13316526 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 126, 75

Conread position: 261-447
Cow position: chr8:29923603-29923416 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 158
Alignm E-value: 0
Alignm gaps (pig, cow): 137, 49

Show alignments to all cow chromosomes.