Cow genome map

Conread name: Emb1-C0005218_C12

Conread position: 1-164
Cow position: chr9:3372186-3372024 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 133
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 120

Conread position: 1-417
Cow position: chr9:4666310-4666736 (view UCSC Genome Browser custom track)
Alignm length: 433
Alignm identity: 312
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 20

Conread position: 1-449
Cow position: chr9:44819276-44819725 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 355
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 95

Conread position: 2-300
Cow position: chr9:4649477-4649167 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 221
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 16, 37

Conread position: 3-338
Cow position: chr9:3005107-3004766 (view UCSC Genome Browser custom track)
Alignm length: 344
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 114

Conread position: 3-435
Cow position: chr9:2679400-2679837 (view UCSC Genome Browser custom track)
Alignm length: 444
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 145

Conread position: 4-206
Cow position: chr9:16176897-16177102 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 115, 40

Conread position: 4-341
Cow position: chr9:26553719-26554038 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 252
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 39

Conread position: 4-449
Cow position: chr9:1995253-1994818 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 343
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 145

Conread position: 4-449
Cow position: chr9:21410434-21410894 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 145

Conread position: 4-449
Cow position: chr9:35594938-35594492 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 14

Conread position: 5-162
Cow position: chr9:8283937-8283772 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 123
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 15, 0

Conread position: 5-257
Cow position: chr9:46859324-46859062 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 190
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 13, 146

Conread position: 5-430
Cow position: chr9:47043094-47043530 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-431
Cow position: chr9:59428144-59428571 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-432
Cow position: chr9:1638001-1638422 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 308
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 31

Conread position: 5-433
Cow position: chr9:50791848-50792288 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 144

Conread position: 5-435
Cow position: chr9:25034426-25033986 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 144

Conread position: 5-435
Cow position: chr9:25903643-25904096 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 249

Conread position: 5-435
Cow position: chr9:28679110-28679540 (view UCSC Genome Browser custom track)
Alignm length: 440
Alignm identity: 337
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-441
Cow position: chr9:827970-827529 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 363
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 143

Conread position: 5-445
Cow position: chr9:13474640-13474191 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 367
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 145

Conread position: 5-445
Cow position: chr9:20176576-20176139 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 312
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 12, 148

Conread position: 5-447
Cow position: chr9:221385-220951 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 5-447
Cow position: chr9:3309759-3310201 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 5-447
Cow position: chr9:26567740-26568182 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 357
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 92

Conread position: 5-447
Cow position: chr9:38677282-38677731 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 351
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 143

Conread position: 5-448
Cow position: chr9:50698437-50698881 (view UCSC Genome Browser custom track)
Alignm length: 463
Alignm identity: 344
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 134

Conread position: 5-449
Cow position: chr9:650889-650436 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 360
Alignm E-value: 0
Alignm gaps (pig, cow): 14, 143

Conread position: 5-450
Cow position: chr9:4942674-4942218 (view UCSC Genome Browser custom track)
Alignm length: 459
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 34

Conread position: 6-433
Cow position: chr9:17063247-17062811 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 340
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 33

Conread position: 7-152
Cow position: chr9:26736893-26737044 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 11, 137

Conread position: 7-153
Cow position: chr9:22432632-22432773 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 118
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 7, 0

Conread position: 7-177
Cow position: chr9:10322941-10323118 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 142
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 11, 141

Conread position: 7-406
Cow position: chr9:22654716-22655124 (view UCSC Genome Browser custom track)
Alignm length: 411
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 138

Conread position: 7-418
Cow position: chr9:10937735-10938150 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 314
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 32

Conread position: 7-448
Cow position: chr9:5141842-5142285 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 333
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-448
Cow position: chr9:30673515-30673967 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 353
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 143

Conread position: 7-448
Cow position: chr9:32970091-32970530 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 342
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 44

Conread position: 7-449
Cow position: chr9:4533631-4534082 (view UCSC Genome Browser custom track)
Alignm length: 456
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 114

Conread position: 7-449
Cow position: chr9:6250438-6250873 (view UCSC Genome Browser custom track)
Alignm length: 457
Alignm identity: 339
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 73

Conread position: 7-449
Cow position: chr9:17304837-17304387 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 354
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 32

Conread position: 7-449
Cow position: chr9:18508682-18508237 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 348
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 32

Conread position: 7-450
Cow position: chr9:7060943-7060475 (view UCSC Genome Browser custom track)
Alignm length: 470
Alignm identity: 345
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 145

Conread position: 8-355
Cow position: chr9:59481655-59481314 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 31

Conread position: 8-412
Cow position: chr9:29627616-29627199 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 313
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 143

Conread position: 8-416
Cow position: chr9:8165730-8165339 (view UCSC Genome Browser custom track)
Alignm length: 412
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 101, 13

Conread position: 8-445
Cow position: chr9:42310818-42311263 (view UCSC Genome Browser custom track)
Alignm length: 449
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 45

Conread position: 9-179
Cow position: chr9:22089658-22089822 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 131
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 93, 10

Conread position: 9-448
Cow position: chr9:37161670-37161226 (view UCSC Genome Browser custom track)
Alignm length: 448
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 9, 135

Conread position: 9-449
Cow position: chr9:25188248-25188679 (view UCSC Genome Browser custom track)
Alignm length: 447
Alignm identity: 347
Alignm E-value: 0
Alignm gaps (pig, cow): 156, 11

Conread position: 10-449
Cow position: chr9:31808732-31809164 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 334
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 19

Conread position: 14-445
Cow position: chr9:35315741-35315287 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 52

Conread position: 16-173
Cow position: chr9:18211405-18211561 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 130
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 24, 101

Conread position: 16-447
Cow position: chr9:2210912-2211353 (view UCSC Genome Browser custom track)
Alignm length: 458
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 11

Conread position: 16-449
Cow position: chr9:37970055-37969620 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 346
Alignm E-value: 0
Alignm gaps (pig, cow): 24, 53

Conread position: 17-314
Cow position: chr9:2497825-2497521 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 23, 128

Conread position: 17-356
Cow position: chr9:49303510-49303181 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 241
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 88, 14

Conread position: 17-433
Cow position: chr9:2871479-2871905 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 18

Conread position: 17-434
Cow position: chr9:17901410-17901001 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 329
Alignm E-value: 0
Alignm gaps (pig, cow): 95, 23

Conread position: 17-444
Cow position: chr9:7003883-7004317 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 330
Alignm E-value: 0
Alignm gaps (pig, cow): 102, 19

Conread position: 17-447
Cow position: chr9:20939472-20939897 (view UCSC Genome Browser custom track)
Alignm length: 439
Alignm identity: 349
Alignm E-value: 0
Alignm gaps (pig, cow): 21, 51

Conread position: 17-450
Cow position: chr9:30827890-30828331 (view UCSC Genome Browser custom track)
Alignm length: 443
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 130

Conread position: 20-431
Cow position: chr9:6977487-6977889 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 19, 54

Conread position: 23-447
Cow position: chr9:4283133-4283546 (view UCSC Genome Browser custom track)
Alignm length: 434
Alignm identity: 306
Alignm E-value: 0
Alignm gaps (pig, cow): 91, 13

Conread position: 23-447
Cow position: chr9:45874683-45875104 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 325
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 86

Conread position: 23-449
Cow position: chr9:2172109-2172531 (view UCSC Genome Browser custom track)
Alignm length: 435
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 10

Conread position: 24-305
Cow position: chr9:29027052-29026762 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 16, 123

Conread position: 24-447
Cow position: chr9:46460891-46460482 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 278
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 156, 46

Conread position: 25-244
Cow position: chr9:3544043-3544269 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 174
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 94, 11

Conread position: 27-447
Cow position: chr9:50094077-50093650 (view UCSC Genome Browser custom track)
Alignm length: 429
Alignm identity: 335
Alignm E-value: 0
Alignm gaps (pig, cow): 12, 118

Conread position: 28-405
Cow position: chr9:34724675-34725052 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 261
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 16, 66

Conread position: 28-448
Cow position: chr9:8402542-8402942 (view UCSC Genome Browser custom track)
Alignm length: 422
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 376, 8

Conread position: 34-449
Cow position: chr9:5005155-5005574 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 324
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 15

Conread position: 34-449
Cow position: chr9:27036083-27036489 (view UCSC Genome Browser custom track)
Alignm length: 420
Alignm identity: 322
Alignm E-value: 0
Alignm gaps (pig, cow): 5, 26

Conread position: 37-445
Cow position: chr9:12912952-12913362 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 328
Alignm E-value: 0
Alignm gaps (pig, cow): 75, 18

Conread position: 38-405
Cow position: chr9:56807198-56806834 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 242
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 138, 14

Conread position: 38-414
Cow position: chr9:49515303-49514929 (view UCSC Genome Browser custom track)
Alignm length: 384
Alignm identity: 247
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 77, 23

Conread position: 38-433
Cow position: chr9:46272297-46272698 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 263
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 70, 106

Conread position: 67-348
Cow position: chr9:8781706-8781422 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 18

Conread position: 71-435
Cow position: chr9:64015463-64015097 (view UCSC Genome Browser custom track)
Alignm length: 371
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 14

Conread position: 79-405
Cow position: chr9:26761802-26761492 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 215
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 30, 20

Conread position: 81-449
Cow position: chr9:26083355-26082970 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 299
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 64

Conread position: 92-447
Cow position: chr9:47545428-47545779 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 266
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 50

Conread position: 105-435
Cow position: chr9:29332494-29332821 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 227
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 23, 36

Conread position: 111-430
Cow position: chr9:26737164-26737477 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 68, 8

Conread position: 252-451
Cow position: chr9:54681354-54681156 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 158
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 64, 0

Show alignments to all cow chromosomes.