Cow genome map
| Conread name: | End1-UMC-pd10en2-001-b01 |
| Conread position: | 3-257 |
| Cow position: | chr5:40708528-40708788 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 117 |
| Conread position: | 4-205 |
| Cow position: | chr5:61032177-61032376 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 77, 24 |
| Conread position: | 4-237 |
| Cow position: | chr5:56961577-56961815 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 97 |
| Conread position: | 4-260 |
| Cow position: | chr5:49154436-49154179 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 189 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 49, 34 |
| Conread position: | 4-263 |
| Cow position: | chr5:49070783-49070530 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 15, 91 |
| Conread position: | 4-272 |
| Cow position: | chr5:9954334-9954058 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 106, 78 |
| Conread position: | 4-278 |
| Cow position: | chr5:51069226-51069501 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 184 |
| Conread position: | 4-286 |
| Cow position: | chr5:15461850-15462134 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 110 |
| Conread position: | 4-286 |
| Cow position: | chr5:24240128-24240407 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 206, 138 |
| Conread position: | 4-286 |
| Cow position: | chr5:42233266-42232988 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 24 |
| Conread position: | 5-210 |
| Cow position: | chr5:51947622-51947830 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 5-284 |
| Cow position: | chr5:51942669-51942954 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 118 |
| Conread position: | 8-277 |
| Cow position: | chr5:52248738-52248458 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 106, 199 |
| Conread position: | 8-280 |
| Cow position: | chr5:39467918-39468189 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 203, 124 |
| Conread position: | 8-281 |
| Cow position: | chr5:4437412-4437687 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 157, 38 |
| Conread position: | 8-281 |
| Cow position: | chr5:68485425-68485695 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 209 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 95, 25 |
| Conread position: | 8-285 |
| Cow position: | chr5:12234722-12234996 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 184, 47 |
| Conread position: | 8-286 |
| Cow position: | chr5:48131428-48131690 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 155, 169 |
| Conread position: | 8-286 |
| Cow position: | chr5:76050336-76050078 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 203, 14 |
| Conread position: | 9-273 |
| Cow position: | chr5:21946081-21946351 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 205 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 105, 113 |
| Conread position: | 22-247 |
| Cow position: | chr5:74283697-74283475 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 172, 165 |
| Conread position: | 22-286 |
| Cow position: | chr5:37715584-37715317 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 33 |
| Conread position: | 33-281 |
| Cow position: | chr5:28529271-28529024 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 179, 75 |
| Conread position: | 33-281 |
| Cow position: | chr5:67423998-67423762 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 178, 60 |
| Conread position: | 46-284 |
| Cow position: | chr5:54169833-54170076 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 183 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 75 |
| Conread position: | 62-281 |
| Cow position: | chr5:36224060-36223839 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 52, 60 |
Show alignments to all cow chromosomes.