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Cow genome map

           
Conread name:
           
End1-UMC-pd10en2-002-f05
        

               
Conread position:
               
1-189
               

               
Cow position:
               
chr14:29029977-29029795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
34, 64
               

               
Conread position:
               
1-194
               

               
Cow position:
               
chr14:41325290-41325486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
53, 85
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr14:25403791-25403997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr14:40433067-40432864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr14:19372488-19372276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr14:20384838-20385049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr14:19360041-19359823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
128, 39
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr14:24796280-24796493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
58, 44
               

               
Conread position:
               
1-221
               

               
Cow position:
               
chr14:27591807-27592022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 0
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr14:18657457-18657675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
82, 108
               

               
Conread position:
               
1-223
               

               
Cow position:
               
chr14:48412733-48412950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr14:34355547-34355779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr14:29698211-29698436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
157, 40
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr14:27077132-27076898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
122, 28
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr14:29632739-29632959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr14:34199702-34199924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
65, 0
               

               
Conread position:
               
1-237
               

               
Cow position:
               
chr14:37883771-37883998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:1977924-1978160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
158, 76
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:10630979-10631207 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
217, 31
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:19129656-19129419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
75, 88
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:19951716-19951479 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
178, 82
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:37131802-37131575 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:42437172-42436938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
127, 84
               

               
Conread position:
               
1-242
               

               
Cow position:
               
chr14:49021756-49021986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
138, 60
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr14:14317028-14316799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr14:48838742-48838509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-245
               

               
Cow position:
               
chr14:46654397-46654632 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
238, 73
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr14:15054842-15055082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
37, 30
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr14:24981601-24981368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr14:33830443-33830211 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
230, 75
               

               
Conread position:
               
1-246
               

               
Cow position:
               
chr14:45605238-45605007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
1-260
               

               
Cow position:
               
chr14:7036208-7036472 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
219, 84
               

               
Conread position:
               
1-261
               

               
Cow position:
               
chr14:33309361-33309607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr14:41966387-41966123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
63, 31
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr14:1859469-1859722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
133, 55
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr14:4202947-4203216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
65, 95
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr14:19618604-19618872 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
224, 53
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr14:14187479-14187221 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr14:28378507-28378231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
219, 75
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr14:13846134-13845859 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
35, 46
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr14:20932761-20932491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
67, 85
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr14:22989181-22988904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 69
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr14:41809509-41809786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
213, 61
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr14:47672738-47673009 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
14, 78
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr14:23424404-23424129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
226, 71
               

               
Conread position:
               
1-283
               

               
Cow position:
               
chr14:23443165-23442890 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
226, 71
               

               
Conread position:
               
1-284
               

               
Cow position:
               
chr14:4877085-4877364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-39
               

               
Alignm gaps (pig, cow):
               
206, 71
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr14:24236970-24236684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
171, 31
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr14:24387595-24387313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-37
               

               
Alignm gaps (pig, cow):
               
123, 76
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr14:40754097-40754382 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
53, 79
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr14:46998192-46997914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
58, 110
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr14:24922248-24921959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 61
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr14:27848345-27848040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
84, 34
               

               
Conread position:
               
1-286
               

               
Cow position:
               
chr14:45677371-45677092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
217, 16
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:5222142-5222425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
189, 63
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:6541577-6541867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
127, 76
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:8541066-8541347 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
12, 78
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:10858578-10858300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
204, 29
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:11470001-11470290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
14, 64
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:13810084-13809814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
279, 78
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:16237360-16237650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
121, 22
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:16256913-16256634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
123, 30
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:16760543-16760259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
178, 31
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:18345587-18345864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
58, 31
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:18904465-18904728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
279, 34
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:19851786-19852076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
142, 99
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:20016558-20016850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 63
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:20110576-20110861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
223, 48
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:20640480-20640769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
228, 105
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:23080617-23080894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
153, 100
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:24417031-24416754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
123, 46
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:28115039-28115331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
173, 80
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:32452399-32452111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
63, 79
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:33791333-33791053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
221, 63
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:35503511-35503223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
184, 71
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:36167085-36166800 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
130, 11
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:40230492-40230775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
219, 64
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:41211000-41210724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
128, 35
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:48427220-48426932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
128, 76
               

               
Conread position:
               
1-287
               

               
Cow position:
               
chr14:50589237-50589530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
75, 211
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr14:23712834-23712550 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
123, 44
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr14:6599806-6600099 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
298
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
73, 108
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr14:13042903-13042612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
230, 78
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr14:33247287-33247567 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
279, 28
               

               
Conread position:
               
1-294
               

               
Cow position:
               
chr14:44084331-44084623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
78, 90
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr14:20712543-20712845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
216, 71
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr14:21933194-21933498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
224, 44
               

               
Conread position:
               
1-302
               

               
Cow position:
               
chr14:15492743-15492436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
160, 63
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr14:39037382-39037082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
312
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
14, 81
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr14:29592577-29592880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
158, 85
               

               
Conread position:
               
1-310
               

               
Cow position:
               
chr14:24608113-24607803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
126, 70
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr14:25779238-25778944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
242, 40
               

               
Conread position:
               
1-311
               

               
Cow position:
               
chr14:26442193-26442513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
129, 90
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr14:26654985-26655305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
127, 43
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr14:33341903-33341581 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
190, 80
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr14:39770086-39770389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
220, 63
               

               
Conread position:
               
2-196
               

               
Cow position:
               
chr14:26190957-26191145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
2-208
               

               
Cow position:
               
chr14:5633792-5633998 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
161, 62
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr14:12035553-12035327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
225, 77
               

               
Conread position:
               
2-237
               

               
Cow position:
               
chr14:28004122-28003885 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
128, 54
               

               
Conread position:
               
2-240
               

               
Cow position:
               
chr14:4227059-4227305 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
91, 233
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr14:10078415-10078183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
68, 0
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr14:8750221-8749990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
77, 0
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr14:26097550-26097782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
221, 31
               

               
Conread position:
               
2-242
               

               
Cow position:
               
chr14:33300851-33300617 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
27, 75
               

               
Conread position:
               
2-271
               

               
Cow position:
               
chr14:27305298-27305026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
121, 86
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:12244236-12244522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:14949067-14949354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
122, 75
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:23682411-23682127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
39, 9
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:25986662-25986372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
166, 75
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:37422642-37422913 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
278, 75
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:42154818-42155107 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
127, 94
               

               
Conread position:
               
2-287
               

               
Cow position:
               
chr14:50362939-50362652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
231, 15
               

               
Conread position:
               
2-293
               

               
Cow position:
               
chr14:12511756-12512037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
220, 30
               

               
Conread position:
               
2-298
               

               
Cow position:
               
chr14:26628379-26628676 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
186, 15
               

               
Conread position:
               
2-308
               

               
Cow position:
               
chr14:30756988-30756680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
188, 89
               

               
Conread position:
               
3-221
               

               
Cow position:
               
chr14:35018610-35018819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr14:22941577-22941796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
125, 74
               

               
Conread position:
               
3-223
               

               
Cow position:
               
chr14:32371600-32371808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr14:4991144-4990917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
3-242
               

               
Cow position:
               
chr14:20600530-20600300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
178, 55
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr14:1646047-1646324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
191, 73
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr14:33456896-33457185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
217, 82
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr14:35420618-35420902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
208, 62
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr14:41749613-41749896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
17, 60
               

               
Conread position:
               
3-287
               

               
Cow position:
               
chr14:48773049-48772777 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
3-304
               

               
Cow position:
               
chr14:8786407-8786693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
277, 74
               

               
Conread position:
               
4-269
               

               
Cow position:
               
chr14:39774907-39775167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
213, 19
               

               
Conread position:
               
4-287
               

               
Cow position:
               
chr14:12954240-12954515 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
52, 24
               

               
Conread position:
               
4-312
               

               
Cow position:
               
chr14:16549860-16550158 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
209, 70
               

               
Conread position:
               
5-274
               

               
Cow position:
               
chr14:36289658-36289917 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
186, 27
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr14:34083011-34083280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
71, 24
               

               
Conread position:
               
5-286
               

               
Cow position:
               
chr14:5630304-5630029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
237, 74
               

               
Conread position:
               
9-279
               

               
Cow position:
               
chr14:18309158-18309431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
119, 74
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr14:1708518-1708799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
211, 46
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr14:15997625-15997891 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 25
               

               
Conread position:
               
9-287
               

               
Cow position:
               
chr14:49824484-49824753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
213, 23
               

               
Conread position:
               
10-287
               

               
Cow position:
               
chr14:1868660-1868928 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
200, 29
               

               
Conread position:
               
12-234
               

               
Cow position:
               
chr14:9308366-9308150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
117, 38
               

               
Conread position:
               
12-287
               

               
Cow position:
               
chr14:7636361-7636639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
105, 21
               

               
Conread position:
               
13-228
               

               
Cow position:
               
chr14:17841154-17841364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
103, 0
               

               
Conread position:
               
13-234
               

               
Cow position:
               
chr14:19863298-19863513 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
191, 64
               

               
Conread position:
               
16-287
               

               
Cow position:
               
chr14:47170220-47170490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
36, 64
               

               
Conread position:
               
17-222
               

               
Cow position:
               
chr14:16834456-16834255 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
17-225
               

               
Cow position:
               
chr14:17810080-17809868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
89, 46
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chr14:16524606-16524337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
160, 13
               

               
Conread position:
               
17-287
               

               
Cow position:
               
chr14:9020158-9019901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
264, 64
               

               
Conread position:
               
18-288
               

               
Cow position:
               
chr14:11285705-11285439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
209, 37
               

               
Conread position:
               
19-224
               

               
Cow position:
               
chr14:39778884-39778683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
19-287
               

               
Cow position:
               
chr14:45362100-45362344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
20-287
               

               
Cow position:
               
chr14:12127284-12127537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
260, 50
               

               
Conread position:
               
20-287
               

               
Cow position:
               
chr14:19193601-19193322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
48, 60
               

               
Conread position:
               
22-287
               

               
Cow position:
               
chr14:10937818-10937530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
78, 180
               

               
Conread position:
               
22-304
               

               
Cow position:
               
chr14:19189168-19188894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
173, 36
               

               
Conread position:
               
22-306
               

               
Cow position:
               
chr14:3194980-3194711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
23-223
               

               
Cow position:
               
chr14:4282383-4282574 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
23-285
               

               
Cow position:
               
chr14:26433115-26433387 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
191, 55
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr14:10609815-10609539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
76, 61
               

               
Conread position:
               
23-287
               

               
Cow position:
               
chr14:28304659-28304927 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
146, 44
               

               
Conread position:
               
23-306
               

               
Cow position:
               
chr14:33714552-33714832 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
106, 54
               

               
Conread position:
               
23-311
               

               
Cow position:
               
chr14:12072825-12073123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
31, 49
               

               
Conread position:
               
26-260
               

               
Cow position:
               
chr14:1796312-1796080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
102, 50
               

               
Conread position:
               
27-287
               

               
Cow position:
               
chr14:15944547-15944807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
81, 37
               

               
Conread position:
               
29-312
               

               
Cow position:
               
chr14:19594011-19594300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
99, 47
               

               
Conread position:
               
31-304
               

               
Cow position:
               
chr14:24945372-24945650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
168, 46
               

               
Conread position:
               
32-205
               

               
Cow position:
               
chr14:42480103-42480267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 44
               

               
Conread position:
               
34-306
               

               
Cow position:
               
chr14:49807283-49807017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
216, 64
               

               
Conread position:
               
36-246
               

               
Cow position:
               
chr14:33751648-33751449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
37-241
               

               
Cow position:
               
chr14:11975617-11975820 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
49, 18
               

               
Conread position:
               
37-305
               

               
Cow position:
               
chr14:25225842-25225566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
37, 53
               

               
Conread position:
               
38-287
               

               
Cow position:
               
chr14:21224750-21224503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
90, 39
               

               
Conread position:
               
39-220
               

               
Cow position:
               
chr14:19959626-19959799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
87, 10
               

               
Conread position:
               
40-191
               

               
Cow position:
               
chr14:2345177-2345031 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
38, 0
               

               
Conread position:
               
45-287
               

               
Cow position:
               
chr14:23103893-23104136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
31, 65
               

               
Conread position:
               
50-287
               

               
Cow position:
               
chr14:37902097-37901860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
79, 29
               

               
Conread position:
               
50-306
               

               
Cow position:
               
chr14:7198600-7198333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
15, 59
               

               
Conread position:
               
55-241
               

               
Cow position:
               
chr14:25334152-25333972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
166, 31
               

               
Conread position:
               
64-266
               

               
Cow position:
               
chr14:16457602-16457406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
159, 17
               

               
Conread position:
               
66-312
               

               
Cow position:
               
chr14:2959619-2959355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
68-287
               

               
Cow position:
               
chr14:19827397-19827612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
68-308
               

               
Cow position:
               
chr14:12884354-12884100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
36, 25
               

               
Conread position:
               
70-270
               

               
Cow position:
               
chr14:10852116-10851905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-32
               

               
Alignm gaps (pig, cow):
               
74, 9
               

               
Conread position:
               
77-245
               

               
Cow position:
               
chr14:24913950-24913784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
144, 29
               

               
Conread position:
               
81-242
               

               
Cow position:
               
chr14:37447390-37447551 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
47, 14
               

               
Conread position:
               
81-287
               

               
Cow position:
               
chr14:13731019-13731237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
81-287
               

               
Cow position:
               
chr14:28924247-28924025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
81-308
               

               
Cow position:
               
chr14:48745306-48745532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
12, 55
               

               
Conread position:
               
82-287
               

               
Cow position:
               
chr14:48744593-48744375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
14, 152
               

               
Conread position:
               
83-287
               

               
Cow position:
               
chr14:12634804-12635017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
83-287
               

               
Cow position:
               
chr14:25228215-25228007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
46, 18
               

               
Conread position:
               
84-242
               

               
Cow position:
               
chr14:12033164-12033320 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
16, 84
               

               
Conread position:
               
85-242
               

               
Cow position:
               
chr14:26148639-26148804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
15, 74
               

               
Conread position:
               
85-242
               

               
Cow position:
               
chr14:34096491-34096652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
86-311
               

               
Cow position:
               
chr14:11643181-11643413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
14, 40
               

               
Conread position:
               
88-287
               

               
Cow position:
               
chr14:25381497-25381300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
18, 70
               

               
Conread position:
               
90-285
               

               
Cow position:
               
chr14:8101860-8101659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 72
               

               
Conread position:
               
90-287
               

               
Cow position:
               
chr14:35381661-35381449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
13, 75
               

               
Conread position:
               
95-287
               

               
Cow position:
               
chr14:21535242-21535443 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
97-306
               

               
Cow position:
               
chr14:1431770-1431982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
98-242
               

               
Cow position:
               
chr14:45577031-45577179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
98-285
               

               
Cow position:
               
chr14:31177226-31177418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
32, 78
               

               
Conread position:
               
98-286
               

               
Cow position:
               
chr14:37934175-37933992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
30, 128
               

               
Conread position:
               
99-220
               

               
Cow position:
               
chr14:2833345-2833470 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
99-237
               

               
Cow position:
               
chr14:20349669-20349814 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
30, 68
               

               
Conread position:
               
99-237
               

               
Cow position:
               
chr14:38338074-38338215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 87
               

               
Conread position:
               
99-258
               

               
Cow position:
               
chr14:5557061-5557224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
28, 161
               

               
Conread position:
               
99-265
               

               
Cow position:
               
chr14:36254636-36254806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
99-267
               

               
Cow position:
               
chr14:19487355-19487185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
30, 130
               

               
Conread position:
               
99-274
               

               
Cow position:
               
chr14:12924362-12924180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
30, 100
               

               
Conread position:
               
99-287
               

               
Cow position:
               
chr14:41837812-41837999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
8e-38
               

               
Alignm gaps (pig, cow):
               
30, 134
               

               
Conread position:
               
99-294
               

               
Cow position:
               
chr14:10706935-10706731 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
27, 38
               

               
Conread position:
               
99-302
               

               
Cow position:
               
chr14:4848407-4848187 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
221
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
99-306
               

               
Cow position:
               
chr14:18302021-18301789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
99-311
               

               
Cow position:
               
chr14:2038748-2038953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
30, 125
               

               
Conread position:
               
100-237
               

               
Cow position:
               
chr14:34331267-34331408 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
142
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
100-287
               

               
Cow position:
               
chr14:25903590-25903392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
101-274
               

               
Cow position:
               
chr14:9308123-9307937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
101-287
               

               
Cow position:
               
chr14:14622120-14622308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
27, 126
               

               
Conread position:
               
101-287
               

               
Cow position:
               
chr14:29734306-29734500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
29, 188
               

               
Conread position:
               
102-279
               

               
Cow position:
               
chr14:15469925-15470117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
23, 55
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr14:8848322-8848138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
22, 66
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr14:9510598-9510405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 13
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr14:11577125-11576929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
28, 85
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr14:11729053-11729247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
102-287
               

               
Cow position:
               
chr14:46977550-46977742 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
28, 118
               

               
Conread position:
               
103-287
               

               
Cow position:
               
chr14:36775706-36775523 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
11, 32
               

               
Conread position:
               
104-227
               

               
Cow position:
               
chr14:33644012-33643888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
104-243
               

               
Cow position:
               
chr14:41486207-41486346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-28
               

               
Alignm gaps (pig, cow):
               
25, 53
               

               
Conread position:
               
104-285
               

               
Cow position:
               
chr14:20466985-20466798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
104, 27
               

               
Conread position:
               
104-286
               

               
Cow position:
               
chr14:21357610-21357418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:606611-606790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
48, 65
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:11056678-11056874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:23078737-23078932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:36442963-36443157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:40165479-40165289 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
5e-34
               

               
Alignm gaps (pig, cow):
               
24, 96
               

               
Conread position:
               
104-287
               

               
Cow position:
               
chr14:40208953-40208768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
25, 141
               

               
Conread position:
               
104-304
               

               
Cow position:
               
chr14:40191640-40191434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
26, 54
               

               
Conread position:
               
105-249
               

               
Cow position:
               
chr14:20481789-20481936 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
23, 51
               

               
Conread position:
               
105-252
               

               
Cow position:
               
chr14:40287646-40287495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
25, 128
               

               
Conread position:
               
105-287
               

               
Cow position:
               
chr14:39918693-39918876 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
24, 115
               

               
Conread position:
               
106-287
               

               
Cow position:
               
chr14:36425358-36425544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
138, 0
               

               
Conread position:
               
110-242
               

               
Cow position:
               
chr14:34983919-34983780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
140
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
19, 0
               

               
Conread position:
               
110-247
               

               
Cow position:
               
chr14:15491205-15491057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
110-285
               

               
Cow position:
               
chr14:7959827-7959660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
170, 18
               

               
Conread position:
               
110-287
               

               
Cow position:
               
chr14:16352393-16352218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
170, 68
               

               
Conread position:
               
112-307
               

               
Cow position:
               
chr14:38747718-38747516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
115, 40
               

               
Conread position:
               
114-287
               

               
Cow position:
               
chr14:41267689-41267863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
11, 127
               

               
Conread position:
               
119-242
               

               
Cow position:
               
chr14:23663368-23663490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
100
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
119-287
               

               
Cow position:
               
chr14:8707589-8707416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
9, 40
               

               
Conread position:
               
122-246
               

               
Cow position:
               
chr14:16761577-16761703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
127
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
109, 0
               

               
Conread position:
               
122-312
               

               
Cow position:
               
chr14:24785691-24785495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
98, 178
               

               
Conread position:
               
125-292
               

               
Cow position:
               
chr14:50519149-50519322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
102, 0
               

               
Conread position:
               
126-306
               

               
Cow position:
               
chr14:19349865-19349690 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
153, 99
               

               
Conread position:
               
127-283
               

               
Cow position:
               
chr14:3173709-3173862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
153, 110
               

               
Conread position:
               
127-293
               

               
Cow position:
               
chr14:21556998-21557171 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
100, 59
               

               
Conread position:
               
128-242
               

               
Cow position:
               
chr14:28707074-28706958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
117
               

               
Alignm identity:
               
94
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
93, 0
               

               
Conread position:
               
128-287
               

               
Cow position:
               
chr14:2759109-2759273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
87, 0
               

               
Conread position:
               
128-307
               

               
Cow position:
               
chr14:12763681-12763864 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 164
               

               
Conread position:
               
129-237
               

               
Cow position:
               
chr14:17092018-17092125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
109
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
129-237
               

               
Cow position:
               
chr14:20071097-20070987 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
111
               

               
Alignm identity:
               
92
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
129-285
               

               
Cow position:
               
chr14:20736637-20736476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
110, 141
               

               
Conread position:
               
129-285
               

               
Cow position:
               
chr14:41191069-41191236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
91, 0
               

               
Conread position:
               
129-287
               

               
Cow position:
               
chr14:18270387-18270220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
96, 0
               

               
Conread position:
               
129-287
               

               
Cow position:
               
chr14:41156698-41156860 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
9e-29
               

               
Alignm gaps (pig, cow):
               
104, 153
               

               
Conread position:
               
129-311
               

               
Cow position:
               
chr14:14280258-14280075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
24, 29
               

               
Conread position:
               
130-285
               

               
Cow position:
               
chr14:11079477-11079317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
97, 0
               

               
Conread position:
               
130-292
               

               
Cow position:
               
chr14:23465024-23465197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
98, 0
               

               
Conread position:
               
130-303
               

               
Cow position:
               
chr14:21530051-21530232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
92, 22
               

               
Conread position:
               
130-312
               

               
Cow position:
               
chr14:33688574-33688756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
78, 73
               

               
Conread position:
               
130-312
               

               
Cow position:
               
chr14:33768692-33768870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
150, 73
               

               
Conread position:
               
133-305
               

               
Cow position:
               
chr14:18112571-18112748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
79, 167
               

               
Conread position:
               
134-294
               

               
Cow position:
               
chr14:44751006-44751173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
88, 0
               

               
Conread position:
               
136-295
               

               
Cow position:
               
chr14:21946406-21946251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
93, 12
               

               
Conread position:
               
142-287
               

               
Cow position:
               
chr14:32784102-32784258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
80, 0
               

               
Conread position:
               
142-296
               

               
Cow position:
               
chr14:11280100-11280262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
142-304
               

               
Cow position:
               
chr14:33618316-33618148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
83, 74
               

               
Conread position:
               
143-285
               

               
Cow position:
               
chr14:20035734-20035580 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
77, 57
               

               
Conread position:
               
143-287
               

               
Cow position:
               
chr14:19772264-19772414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 10
               

               
Conread position:
               
143-287
               

               
Cow position:
               
chr14:36151337-36151184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
143-312
               

               
Cow position:
               
chr14:11604894-11604716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
82, 140
               

               
Conread position:
               
144-287
               

               
Cow position:
               
chr14:24845978-24845839 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
78, 86
               

               
Conread position:
               
145-287
               

               
Cow position:
               
chr14:8949660-8949511 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
151
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
82, 65
               

               
Conread position:
               
145-300
               

               
Cow position:
               
chr14:15228550-15228389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
80, 120
               

               
Conread position:
               
146-235
               

               
Cow position:
               
chr14:21538427-21538517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
91
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
146-237
               

               
Cow position:
               
chr14:47224356-47224447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
92
               

               
Alignm identity:
               
79
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
146-285
               

               
Cow position:
               
chr14:25912660-25912516 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
79, 0
               

               
Conread position:
               
146-287
               

               
Cow position:
               
chr14:12505627-12505758 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
116
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
134, 24
               

               
Conread position:
               
146-287
               

               
Cow position:
               
chr14:21592994-21593142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
149
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
81, 0
               

               
Conread position:
               
149-306
               

               
Cow position:
               
chr14:40806605-40806756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
76, 0
               

               
Conread position:
               
150-312
               

               
Cow position:
               
chr14:19633233-19633073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
126, 75
               

               
Conread position:
               
158-287
               

               
Cow position:
               
chr14:109493-109618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
6e-25
               

               
Alignm gaps (pig, cow):
               
122, 79
               

               
Conread position:
               
158-293
               

               
Cow position:
               
chr14:19355284-19355146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
105
               

               
Alignm E-value:
               
4e-22
               

               
Alignm gaps (pig, cow):
               
64, 0
               

               
Conread position:
               
158-314
               

               
Cow position:
               
chr14:24991483-24991332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
122, 39
               

               
Conread position:
               
161-274
               

               
Cow position:
               
chr14:2712028-2712137 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
114
               

               
Alignm identity:
               
95
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
76, 0
               
Show alignments to all cow chromosomes.