Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-101 |
| Cow position: | chr1:40877923-40878023 (view UCSC Genome Browser custom track) |
| Alignm length: | 101 |
| Alignm identity: | 88 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-120 |
| Cow position: | chr1:26511366-26511489 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 98 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-130 |
| Cow position: | chr1:80275710-80275840 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 110 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 1-136 |
| Cow position: | chr1:58303672-58303534 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 55, 40 |
| Conread position: | 1-137 |
| Cow position: | chr1:13737970-13738110 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 108 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-159 |
| Cow position: | chr1:93244847-93244687 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 96, 0 |
| Conread position: | 1-163 |
| Cow position: | chr1:64753447-64753278 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-167 |
| Cow position: | chr1:31978921-31979089 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-173 |
| Cow position: | chr1:39638721-39638894 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 92, 29 |
| Conread position: | 1-178 |
| Cow position: | chr1:35544339-35544514 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 44, 22 |
| Conread position: | 1-188 |
| Cow position: | chr1:55114711-55114525 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 154 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 1-189 |
| Cow position: | chr1:4279596-4279784 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 75, 44 |
| Conread position: | 1-189 |
| Cow position: | chr1:57562996-57562805 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 55, 100 |
| Conread position: | 1-189 |
| Cow position: | chr1:65187807-65187617 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 153 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 55, 182 |
| Conread position: | 1-189 |
| Cow position: | chr1:81491489-81491302 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 55, 83 |
| Conread position: | 1-189 |
| Cow position: | chr1:85000727-85000916 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 151 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 1-189 |
| Cow position: | chr1:89915901-89915711 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 158 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 75, 43 |
| Conread position: | 1-189 |
| Cow position: | chr1:93392029-93391840 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 157 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr1:94408998-94409176 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-223 |
| Cow position: | chr1:13314108-13313876 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 171 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-249 |
| Cow position: | chr1:90845379-90845623 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 187 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 159 |
| Conread position: | 1-281 |
| Cow position: | chr1:69703119-69702846 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 1-368 |
| Cow position: | chr1:88973066-88973432 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 257 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 90, 44 |
| Conread position: | 1-369 |
| Cow position: | chr1:60860280-60859910 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 141 |
| Conread position: | 1-375 |
| Cow position: | chr1:6968774-6968409 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 164 |
| Conread position: | 1-375 |
| Cow position: | chr1:17092438-17092064 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 94 |
| Conread position: | 1-375 |
| Cow position: | chr1:20806970-20807343 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 90 |
| Conread position: | 1-375 |
| Cow position: | chr1:23086364-23086730 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 91 |
| Conread position: | 1-377 |
| Cow position: | chr1:20264523-20264887 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 244 |
| Conread position: | 2-189 |
| Cow position: | chr1:83321489-83321682 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 2-354 |
| Cow position: | chr1:13680954-13681315 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 43 |
| Conread position: | 2-375 |
| Cow position: | chr1:14383001-14383362 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 9 |
| Conread position: | 3-189 |
| Cow position: | chr1:57357425-57357231 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 140 |
| Conread position: | 3-193 |
| Cow position: | chr1:84760545-84760741 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 180 |
| Conread position: | 3-356 |
| Cow position: | chr1:61554050-61554397 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 240 |
| Conread position: | 3-369 |
| Cow position: | chr1:92709168-92708820 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 4-369 |
| Cow position: | chr1:31126816-31127182 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 51 |
| Conread position: | 8-189 |
| Cow position: | chr1:13992593-13992411 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 13-375 |
| Cow position: | chr1:57854515-57854152 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 134 |
| Conread position: | 13-376 |
| Cow position: | chr1:81454579-81454209 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 172 |
| Conread position: | 18-169 |
| Cow position: | chr1:24509620-24509468 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 18-189 |
| Cow position: | chr1:57893455-57893278 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 38, 0 |
| Conread position: | 25-188 |
| Cow position: | chr1:15983725-15983887 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 151, 5 |
| Conread position: | 25-188 |
| Cow position: | chr1:71087036-71086869 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 25-375 |
| Cow position: | chr1:23920788-23921135 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 115 |
| Conread position: | 28-177 |
| Cow position: | chr1:24763846-24763999 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr1:61606621-61606469 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr1:67902143-67902296 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr1:43588646-43588498 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 28-187 |
| Cow position: | chr1:94390743-94390581 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-375 |
| Cow position: | chr1:46389316-46388975 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 242 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 30-375 |
| Cow position: | chr1:100046086-100045748 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 261, 150 |
| Conread position: | 31-217 |
| Cow position: | chr1:97447457-97447267 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 46-189 |
| Cow position: | chr1:86643056-86643201 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 117 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 12, 66 |
| Conread position: | 48-371 |
| Cow position: | chr1:4264640-4264969 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 164 |
| Conread position: | 51-377 |
| Cow position: | chr1:12521309-12521626 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 51-377 |
| Cow position: | chr1:12568709-12569026 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 228 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 18, 82 |
| Conread position: | 52-375 |
| Cow position: | chr1:41607440-41607115 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 248 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 131 |
| Conread position: | 54-375 |
| Cow position: | chr1:70178269-70177952 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 191 |
| Conread position: | 78-188 |
| Cow position: | chr1:57220414-57220523 (view UCSC Genome Browser custom track) |
| Alignm length: | 111 |
| Alignm identity: | 90 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 96-375 |
| Cow position: | chr1:78259306-78259585 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 117, 145 |
| Conread position: | 115-272 |
| Cow position: | chr1:8146938-8147091 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 87, 0 |
| Conread position: | 179-375 |
| Cow position: | chr1:40415555-40415358 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 17, 81 |
| Conread position: | 186-373 |
| Cow position: | chr1:93391864-93391683 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 186-374 |
| Cow position: | chr1:57357255-57357072 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 56 |
| Conread position: | 186-375 |
| Cow position: | chr1:57562829-57562643 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 186-375 |
| Cow position: | chr1:65187640-65187457 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 15, 0 |
| Conread position: | 186-375 |
| Cow position: | chr1:80175025-80175211 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 29, 0 |
| Conread position: | 186-375 |
| Cow position: | chr1:85000892-85001081 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 186-375 |
| Cow position: | chr1:89407453-89407639 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 93, 78 |
| Conread position: | 187-369 |
| Cow position: | chr1:89915734-89915552 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 32, 62 |
| Conread position: | 187-375 |
| Cow position: | chr1:13992434-13992249 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 34, 71 |
| Conread position: | 187-375 |
| Cow position: | chr1:57220501-57220686 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 191-375 |
| Cow position: | chr1:61606476-61606294 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 191-375 |
| Cow position: | chr1:67902289-67902471 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 111, 67 |
| Conread position: | 194-365 |
| Cow position: | chr1:81491318-81491151 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 194-375 |
| Cow position: | chr1:14169617-14169796 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 194-375 |
| Cow position: | chr1:71086885-71086705 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 45, 72 |
| Conread position: | 194-375 |
| Cow position: | chr1:87741088-87740908 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 196-377 |
| Cow position: | chr1:94744721-94744542 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 91, 69 |
| Conread position: | 209-375 |
| Cow position: | chr1:13313862-13313692 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 45, 32 |
| Conread position: | 215-375 |
| Cow position: | chr1:24684499-24684659 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 27, 59 |
| Conread position: | 215-375 |
| Cow position: | chr1:77376910-77376754 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 217-373 |
| Cow position: | chr1:31979116-31979270 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 125 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 24, 0 |
Show alignments to all cow chromosomes.