Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-143 |
| Cow position: | chr10:42673393-42673542 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 114 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-150 |
| Cow position: | chr10:5863871-5864025 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 1-159 |
| Cow position: | chr10:64322806-64322638 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 127 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-166 |
| Cow position: | chr10:38435505-38435333 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 1-169 |
| Cow position: | chr10:19651411-19651581 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-178 |
| Cow position: | chr10:32981253-32981082 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 1-179 |
| Cow position: | chr10:29098609-29098800 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 144 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 35, 108 |
| Conread position: | 1-183 |
| Cow position: | chr10:16804184-16804369 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 149 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr10:726687-726495 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 57, 111 |
| Conread position: | 1-189 |
| Cow position: | chr10:8095246-8095056 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 89 |
| Conread position: | 1-189 |
| Cow position: | chr10:15381631-15381439 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr10:58840732-58840540 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 1-189 |
| Cow position: | chr10:63029817-63030000 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 76, 138 |
| Conread position: | 1-189 |
| Cow position: | chr10:68370851-68370660 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 52, 95 |
| Conread position: | 1-350 |
| Cow position: | chr10:63378385-63378711 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 79, 142 |
| Conread position: | 1-375 |
| Cow position: | chr10:17179114-17179493 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 192 |
| Conread position: | 1-375 |
| Cow position: | chr10:50527530-50527882 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 24 |
| Conread position: | 1-375 |
| Cow position: | chr10:69685590-69685960 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 226 |
| Conread position: | 1-377 |
| Cow position: | chr10:12537622-12537991 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 43 |
| Conread position: | 2-146 |
| Cow position: | chr10:52421037-52420894 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 107, 91 |
| Conread position: | 2-345 |
| Cow position: | chr10:14959870-14959524 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 242 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 4-174 |
| Cow position: | chr10:55932662-55932488 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 10, 98 |
| Conread position: | 4-196 |
| Cow position: | chr10:3648536-3648730 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 4-372 |
| Cow position: | chr10:28854534-28854897 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 52 |
| Conread position: | 4-374 |
| Cow position: | chr10:10223653-10223283 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 4-375 |
| Cow position: | chr10:592654-593003 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 40 |
| Conread position: | 4-375 |
| Cow position: | chr10:4909236-4908865 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 35 |
| Conread position: | 4-375 |
| Cow position: | chr10:29495608-29495976 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 79 |
| Conread position: | 8-362 |
| Cow position: | chr10:26023692-26023334 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 238 |
| Conread position: | 11-375 |
| Cow position: | chr10:65688437-65688797 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 265 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 119, 33 |
| Conread position: | 14-129 |
| Cow position: | chr10:36559196-36559307 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 15-258 |
| Cow position: | chr10:66427730-66427479 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 41, 176 |
| Conread position: | 25-188 |
| Cow position: | chr10:16951314-16951147 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 27-169 |
| Cow position: | chr10:21372934-21373079 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 28-162 |
| Cow position: | chr10:55305580-55305442 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-174 |
| Cow position: | chr10:63475312-63475458 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr10:23765651-23765499 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr10:55917473-55917327 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr10:40428683-40428529 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 117 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr10:52666661-52666815 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 30 |
| Conread position: | 28-178 |
| Cow position: | chr10:62613297-62613450 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr10:36474805-36474642 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 52, 27 |
| Conread position: | 28-188 |
| Cow position: | chr10:46395663-46395826 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 30-188 |
| Cow position: | chr10:23734226-23734065 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 38-189 |
| Cow position: | chr10:34806499-34806650 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 7, 19 |
| Conread position: | 169-375 |
| Cow position: | chr10:54966915-54966714 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 10 |
| Conread position: | 169-377 |
| Cow position: | chr10:46080680-46080888 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 19, 74 |
| Conread position: | 186-373 |
| Cow position: | chr10:46395803-46395986 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 110, 29 |
| Conread position: | 186-375 |
| Cow position: | chr10:19622302-19622113 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 94 |
| Conread position: | 191-375 |
| Cow position: | chr10:40428537-40428356 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 191-375 |
| Cow position: | chr10:62613442-62613624 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 191-375 |
| Cow position: | chr10:67566876-67566694 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 194-375 |
| Cow position: | chr10:8095072-8094895 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 88, 46 |
| Conread position: | 194-375 |
| Cow position: | chr10:41305453-41305633 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 194-375 |
| Cow position: | chr10:52647457-52647279 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 93, 64 |
| Conread position: | 195-375 |
| Cow position: | chr10:726510-726332 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 196-372 |
| Cow position: | chr10:15381453-15381282 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 196-373 |
| Cow position: | chr10:21373078-21373253 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 204-375 |
| Cow position: | chr10:23765492-23765323 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 78, 54 |
| Conread position: | 214-375 |
| Cow position: | chr10:32981073-32980915 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 215-375 |
| Cow position: | chr10:38435315-38435165 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.