Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-122 |
| Cow position: | chr11:2546201-2546075 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-122 |
| Cow position: | chr11:20990974-20991097 (view UCSC Genome Browser custom track) |
| Alignm length: | 124 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-123 |
| Cow position: | chr11:76871266-76871392 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 1-131 |
| Cow position: | chr11:66869223-66869360 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-136 |
| Cow position: | chr11:79807826-79807685 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 1-167 |
| Cow position: | chr11:106402-106229 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-167 |
| Cow position: | chr11:7044809-7044642 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-167 |
| Cow position: | chr11:7051092-7050926 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 126 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 105, 54 |
| Conread position: | 1-169 |
| Cow position: | chr11:4678221-4678044 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-174 |
| Cow position: | chr11:26305213-26305386 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 138 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 51, 7 |
| Conread position: | 1-178 |
| Cow position: | chr11:62409191-62409357 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 1-178 |
| Cow position: | chr11:66889854-66889686 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 60, 0 |
| Conread position: | 1-188 |
| Cow position: | chr11:11685033-11684851 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 179, 23 |
| Conread position: | 1-188 |
| Cow position: | chr11:39997277-39997459 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 127, 23 |
| Conread position: | 1-188 |
| Cow position: | chr11:77178503-77178313 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 154 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-188 |
| Cow position: | chr11:81347948-81347760 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-189 |
| Cow position: | chr11:12167460-12167652 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 79, 38 |
| Conread position: | 1-189 |
| Cow position: | chr11:30216190-30216372 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 90, 0 |
| Conread position: | 1-189 |
| Cow position: | chr11:70888139-70888334 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-189 |
| Cow position: | chr11:79726808-79726611 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 78, 29 |
| Conread position: | 1-195 |
| Cow position: | chr11:63275683-63275884 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 51, 125 |
| Conread position: | 1-224 |
| Cow position: | chr11:6575476-6575249 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 177 |
| Conread position: | 1-362 |
| Cow position: | chr11:50649122-50649484 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 245 |
| Conread position: | 1-375 |
| Cow position: | chr11:39276796-39277153 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 190 |
| Conread position: | 1-375 |
| Cow position: | chr11:40366718-40366350 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 141 |
| Conread position: | 1-375 |
| Cow position: | chr11:64814134-64813758 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 133 |
| Conread position: | 1-376 |
| Cow position: | chr11:14135048-14134676 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 242 |
| Conread position: | 2-189 |
| Cow position: | chr11:70142611-70142806 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 3-123 |
| Cow position: | chr11:14673806-14673925 (view UCSC Genome Browser custom track) |
| Alignm length: | 121 |
| Alignm identity: | 96 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-189 |
| Cow position: | chr11:30766736-30766929 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-342 |
| Cow position: | chr11:77161307-77160970 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 74, 27 |
| Conread position: | 3-373 |
| Cow position: | chr11:37334909-37334537 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 6 |
| Conread position: | 4-177 |
| Cow position: | chr11:66033984-66033807 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 4-189 |
| Cow position: | chr11:66166403-66166217 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 20 |
| Conread position: | 4-371 |
| Cow position: | chr11:30084220-30084586 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 137 |
| Conread position: | 4-372 |
| Cow position: | chr11:5292463-5292822 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 4-373 |
| Cow position: | chr11:5441074-5441446 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 35 |
| Conread position: | 4-375 |
| Cow position: | chr11:7662514-7662136 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 167 |
| Conread position: | 4-375 |
| Cow position: | chr11:37319591-37319216 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 184 |
| Conread position: | 4-375 |
| Cow position: | chr11:38680047-38679680 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 183 |
| Conread position: | 4-375 |
| Cow position: | chr11:76599749-76600118 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 180 |
| Conread position: | 5-375 |
| Cow position: | chr11:3160822-3161183 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 36 |
| Conread position: | 8-189 |
| Cow position: | chr11:42119338-42119517 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 50, 117 |
| Conread position: | 28-159 |
| Cow position: | chr11:61834174-61834040 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 105 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 52, 23 |
| Conread position: | 28-174 |
| Cow position: | chr11:63671322-63671472 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr11:9754946-9754794 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 17, 37 |
| Conread position: | 28-177 |
| Cow position: | chr11:32205768-32205921 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr11:14353289-14353443 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 118 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr11:72416758-72416604 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 28-188 |
| Cow position: | chr11:80343692-80343857 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-189 |
| Cow position: | chr11:26280228-26280394 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-375 |
| Cow position: | chr11:896576-896905 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 235 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 29-188 |
| Cow position: | chr11:80192673-80192510 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 30-375 |
| Cow position: | chr11:26232510-26232856 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 22 |
| Conread position: | 38-375 |
| Cow position: | chr11:32389784-32389466 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 49-209 |
| Cow position: | chr11:58537470-58537630 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 72-188 |
| Cow position: | chr11:63988809-63988926 (view UCSC Genome Browser custom track) |
| Alignm length: | 118 |
| Alignm identity: | 92 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 109, 0 |
| Conread position: | 126-373 |
| Cow position: | chr11:2545971-2545716 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 82, 20 |
| Conread position: | 126-375 |
| Cow position: | chr11:35576899-35576651 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 57 |
| Conread position: | 140-360 |
| Cow position: | chr11:10007598-10007826 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 95, 22 |
| Conread position: | 140-375 |
| Cow position: | chr11:14673914-14674148 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 11, 44 |
| Conread position: | 171-375 |
| Cow position: | chr11:30216331-30216533 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 69 |
| Conread position: | 176-372 |
| Cow position: | chr11:58537618-58537817 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 37, 76 |
| Conread position: | 180-375 |
| Cow position: | chr11:63671457-63671648 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 186-360 |
| Cow position: | chr11:66889699-66889533 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 186-375 |
| Cow position: | chr11:20992297-20992482 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 82, 56 |
| Conread position: | 186-377 |
| Cow position: | chr11:66869765-66869952 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 191-375 |
| Cow position: | chr11:9754801-9754619 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 191-375 |
| Cow position: | chr11:80192528-80192348 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 191-376 |
| Cow position: | chr11:72416612-72416429 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 129 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 194-362 |
| Cow position: | chr11:49604091-49604255 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 111, 71 |
| Conread position: | 194-372 |
| Cow position: | chr11:63988910-63989088 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 13, 48 |
| Conread position: | 194-373 |
| Cow position: | chr11:12167636-12167811 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 194-375 |
| Cow position: | chr11:7399690-7399868 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 38, 51 |
| Conread position: | 194-375 |
| Cow position: | chr11:70888318-70888491 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 102, 39 |
| Conread position: | 196-374 |
| Cow position: | chr11:76871423-76871597 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 25, 52 |
| Conread position: | 215-372 |
| Cow position: | chr11:63598675-63598830 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 53, 25 |
| Conread position: | 215-375 |
| Cow position: | chr11:59374855-59375013 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 217-375 |
| Cow position: | chr11:1994444-1994289 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 223-375 |
| Cow position: | chr11:32205941-32206092 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 66, 35 |
Show alignments to all cow chromosomes.