Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-131 |
| Cow position: | chr12:26174535-26174407 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 104 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 51, 80 |
| Conread position: | 1-144 |
| Cow position: | chr12:40549134-40548984 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-146 |
| Cow position: | chr12:42940914-42941061 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-159 |
| Cow position: | chr12:41777984-41777827 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 96 |
| Conread position: | 1-167 |
| Cow position: | chr12:39551936-39551764 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-188 |
| Cow position: | chr12:4146136-4146323 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 148 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-189 |
| Cow position: | chr12:30531898-30531709 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-189 |
| Cow position: | chr12:31608665-31608858 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 157 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-189 |
| Cow position: | chr12:39177542-39177725 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 1-269 |
| Cow position: | chr12:31870931-31871202 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 10 |
| Conread position: | 1-282 |
| Cow position: | chr12:11213278-11213014 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 87, 168 |
| Conread position: | 1-368 |
| Cow position: | chr12:45703823-45704186 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 189 |
| Conread position: | 1-372 |
| Cow position: | chr12:8494174-8493810 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 139 |
| Conread position: | 1-373 |
| Cow position: | chr12:36069142-36069516 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 100 |
| Conread position: | 1-375 |
| Cow position: | chr12:13634840-13634474 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 29 |
| Conread position: | 1-375 |
| Cow position: | chr12:15072763-15073123 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 42 |
| Conread position: | 1-375 |
| Cow position: | chr12:39115029-39115389 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 60 |
| Conread position: | 1-375 |
| Cow position: | chr12:42786100-42786451 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 1-377 |
| Cow position: | chr12:2005271-2004908 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 1-377 |
| Cow position: | chr12:16081694-16082070 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 12, 243 |
| Conread position: | 1-377 |
| Cow position: | chr12:21268620-21268260 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 3-166 |
| Cow position: | chr12:20225670-20225512 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 53, 34 |
| Conread position: | 3-188 |
| Cow position: | chr12:5251267-5251087 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 98, 22 |
| Conread position: | 3-269 |
| Cow position: | chr12:6689439-6689706 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 33 |
| Conread position: | 3-362 |
| Cow position: | chr12:26292550-26292894 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 105 |
| Conread position: | 4-372 |
| Cow position: | chr12:6931642-6932014 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 114 |
| Conread position: | 4-372 |
| Cow position: | chr12:16908646-16909009 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 5-375 |
| Cow position: | chr12:15131892-15131514 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 16, 181 |
| Conread position: | 8-375 |
| Cow position: | chr12:5982217-5982597 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 248 |
| Conread position: | 27-184 |
| Cow position: | chr12:30231754-30231916 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 28-174 |
| Cow position: | chr12:34597791-34597940 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 28-177 |
| Cow position: | chr12:9013981-9014134 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr12:36251616-36251466 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 28-375 |
| Cow position: | chr12:27133557-27133220 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 249 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 30-187 |
| Cow position: | chr12:30446359-30446522 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 40-195 |
| Cow position: | chr12:9277038-9276878 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 48-188 |
| Cow position: | chr12:15365606-15365750 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 54-189 |
| Cow position: | chr12:16352395-16352529 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 26, 100 |
| Conread position: | 63-188 |
| Cow position: | chr12:17691238-17691114 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 98 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 72-174 |
| Cow position: | chr12:23226164-23226062 (view UCSC Genome Browser custom track) |
| Alignm length: | 103 |
| Alignm identity: | 85 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 88-375 |
| Cow position: | chr12:32865817-32865535 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 125, 91 |
| Conread position: | 121-377 |
| Cow position: | chr12:26174188-26173933 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 120 |
| Conread position: | 187-377 |
| Cow position: | chr12:5251110-5250922 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 95, 78 |
| Conread position: | 191-362 |
| Cow position: | chr12:39177706-39177869 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 191-375 |
| Cow position: | chr12:10853516-10853334 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 191-377 |
| Cow position: | chr12:30446504-30446688 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 194-372 |
| Cow position: | chr12:4146308-4146482 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 194-373 |
| Cow position: | chr12:9276901-9276728 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 194-375 |
| Cow position: | chr12:17691129-17690950 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 197-365 |
| Cow position: | chr12:36251468-36251300 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 97, 44 |
| Conread position: | 238-375 |
| Cow position: | chr12:42941129-42941264 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 58, 0 |
Show alignments to all cow chromosomes.