Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-188 |
| Cow position: | chr13:27228029-27228218 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 51, 181 |
| Conread position: | 1-189 |
| Cow position: | chr13:31437340-31437531 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 1-190 |
| Cow position: | chr13:17935522-17935716 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 154 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-193 |
| Cow position: | chr13:53826691-53826887 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 156 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 81, 43 |
| Conread position: | 1-198 |
| Cow position: | chr13:19328100-19327899 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 59, 195 |
| Conread position: | 1-309 |
| Cow position: | chr13:25792120-25792434 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 168 |
| Conread position: | 1-365 |
| Cow position: | chr13:26367213-26366846 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 43 |
| Conread position: | 1-371 |
| Cow position: | chr13:55952921-55952559 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 206 |
| Conread position: | 1-372 |
| Cow position: | chr13:25347311-25347655 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 273 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 79, 35 |
| Conread position: | 1-373 |
| Cow position: | chr13:25343013-25343375 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 141 |
| Conread position: | 1-373 |
| Cow position: | chr13:48203825-48204191 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 68 |
| Conread position: | 1-375 |
| Cow position: | chr13:8644000-8643619 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 245 |
| Conread position: | 1-375 |
| Cow position: | chr13:20630532-20630883 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 1-375 |
| Cow position: | chr13:41201654-41201282 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 152 |
| Conread position: | 1-377 |
| Cow position: | chr13:6349870-6350271 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 259 |
| Conread position: | 3-169 |
| Cow position: | chr13:43712333-43712508 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-189 |
| Cow position: | chr13:14610905-14610714 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 3-350 |
| Cow position: | chr13:56227416-56227766 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 8 |
| Conread position: | 3-375 |
| Cow position: | chr13:17129623-17130001 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 187 |
| Conread position: | 4-375 |
| Cow position: | chr13:20267970-20268332 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 122 |
| Conread position: | 4-375 |
| Cow position: | chr13:44433935-44433562 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 87, 167 |
| Conread position: | 4-375 |
| Cow position: | chr13:56231762-56232134 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 5-187 |
| Cow position: | chr13:38108834-38108659 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 102, 115 |
| Conread position: | 6-369 |
| Cow position: | chr13:51091094-51091466 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 181 |
| Conread position: | 12-193 |
| Cow position: | chr13:13498334-13498515 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 17-368 |
| Cow position: | chr13:55383219-55382875 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 71 |
| Conread position: | 19-189 |
| Cow position: | chr13:42649535-42649710 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 28-162 |
| Cow position: | chr13:15853602-15853464 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 31-177 |
| Cow position: | chr13:27885099-27885247 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 40-188 |
| Cow position: | chr13:59434346-59434492 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 5, 16 |
| Conread position: | 40-369 |
| Cow position: | chr13:41356292-41355985 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 231 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 46-147 |
| Cow position: | chr13:56863541-56863644 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 86 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 50-375 |
| Cow position: | chr13:16810052-16810358 (view UCSC Genome Browser custom track) |
| Alignm length: | 328 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 141 |
| Conread position: | 53-375 |
| Cow position: | chr13:20460802-20460481 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 109 |
| Conread position: | 59-375 |
| Cow position: | chr13:51135615-51135927 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 124 |
| Conread position: | 64-174 |
| Cow position: | chr13:22944716-22944602 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 96 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 64-178 |
| Cow position: | chr13:34470694-34470580 (view UCSC Genome Browser custom track) |
| Alignm length: | 115 |
| Alignm identity: | 90 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 178-375 |
| Cow position: | chr13:13498477-13498675 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 9, 38 |
| Conread position: | 183-375 |
| Cow position: | chr13:33246860-33247042 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 99, 28 |
| Conread position: | 186-375 |
| Cow position: | chr13:25785914-25785726 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 24, 56 |
| Conread position: | 186-377 |
| Cow position: | chr13:22944611-22944420 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 194-372 |
| Cow position: | chr13:6333873-6334049 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 124, 46 |
| Conread position: | 194-375 |
| Cow position: | chr13:14610730-14610552 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 86, 47 |
| Conread position: | 194-375 |
| Cow position: | chr13:15853454-15853275 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 21, 75 |
| Conread position: | 194-375 |
| Cow position: | chr13:17935699-17935879 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 49 |
| Conread position: | 194-375 |
| Cow position: | chr13:19327923-19327748 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 84, 20 |
| Conread position: | 201-375 |
| Cow position: | chr13:43639741-43639915 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 18, 41 |
| Conread position: | 214-375 |
| Cow position: | chr13:27885265-27885428 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 46, 68 |
| Conread position: | 241-375 |
| Cow position: | chr13:48946123-48946255 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 0 |
Show alignments to all cow chromosomes.