Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-163 |
| Cow position: | chr14:46398435-46398265 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 1-169 |
| Cow position: | chr14:3925752-3925931 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 1-188 |
| Cow position: | chr14:37447936-37448121 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 79, 25 |
| Conread position: | 1-189 |
| Cow position: | chr14:33595392-33595199 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 156 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-284 |
| Cow position: | chr14:45572558-45572262 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 1-369 |
| Cow position: | chr14:31380550-31380915 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 200 |
| Conread position: | 1-375 |
| Cow position: | chr14:3168534-3168174 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 158 |
| Conread position: | 1-375 |
| Cow position: | chr14:25988750-25988377 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 171 |
| Conread position: | 1-375 |
| Cow position: | chr14:32797902-32797543 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 96 |
| Conread position: | 1-375 |
| Cow position: | chr14:46564883-46564509 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 181 |
| Conread position: | 1-375 |
| Cow position: | chr14:46582575-46582953 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 44 |
| Conread position: | 1-377 |
| Cow position: | chr14:12299776-12299398 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 244 |
| Conread position: | 1-377 |
| Cow position: | chr14:14778873-14779251 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 191 |
| Conread position: | 1-377 |
| Cow position: | chr14:32724003-32723652 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 271 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 57, 163 |
| Conread position: | 2-188 |
| Cow position: | chr14:24385901-24385720 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 178, 22 |
| Conread position: | 3-374 |
| Cow position: | chr14:25151492-25151113 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 255 |
| Conread position: | 3-375 |
| Cow position: | chr14:25170489-25170846 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 133 |
| Conread position: | 4-193 |
| Cow position: | chr14:2326745-2326562 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 4-323 |
| Cow position: | chr14:35049524-35049207 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 40 |
| Conread position: | 4-375 |
| Cow position: | chr14:45594924-45595288 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 47 |
| Conread position: | 4-375 |
| Cow position: | chr14:45763708-45764080 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 60 |
| Conread position: | 4-375 |
| Cow position: | chr14:46046123-46046505 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 41 |
| Conread position: | 4-375 |
| Cow position: | chr14:48104874-48105235 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 90 |
| Conread position: | 5-376 |
| Cow position: | chr14:29712324-29712684 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 181 |
| Conread position: | 7-174 |
| Cow position: | chr14:43219812-43219978 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 84 |
| Conread position: | 7-178 |
| Cow position: | chr14:12369533-12369363 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 28-178 |
| Cow position: | chr14:21998659-21998510 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 28-188 |
| Cow position: | chr14:35172622-35172786 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 124 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 38-188 |
| Cow position: | chr14:8217539-8217389 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 142, 96 |
| Conread position: | 39-374 |
| Cow position: | chr14:44481194-44481529 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 17, 34 |
| Conread position: | 46-188 |
| Cow position: | chr14:1454294-1454440 (view UCSC Genome Browser custom track) |
| Alignm length: | 147 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 48-223 |
| Cow position: | chr14:46952953-46952781 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 144 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 48-369 |
| Cow position: | chr14:1208641-1208949 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 65, 0 |
| Conread position: | 49-262 |
| Cow position: | chr14:32215677-32215896 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 94, 132 |
| Conread position: | 51-189 |
| Cow position: | chr14:3094834-3094693 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 26, 17 |
| Conread position: | 59-189 |
| Cow position: | chr14:10735615-10735481 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 102 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 73-375 |
| Cow position: | chr14:42409558-42409255 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 166 |
| Conread position: | 186-334 |
| Cow position: | chr14:3094717-3094570 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 111 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 27, 57 |
| Conread position: | 186-346 |
| Cow position: | chr14:26130560-26130720 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 23, 57 |
| Conread position: | 186-375 |
| Cow position: | chr14:2326589-2326405 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 101, 16 |
| Conread position: | 191-375 |
| Cow position: | chr14:9580459-9580641 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 105, 77 |
| Conread position: | 191-375 |
| Cow position: | chr14:21776697-21776878 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 191-375 |
| Cow position: | chr14:21875403-21875585 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 191-375 |
| Cow position: | chr14:35172767-35172949 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 96, 77 |
| Conread position: | 194-369 |
| Cow position: | chr14:37448106-37448276 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 48 |
| Conread position: | 194-372 |
| Cow position: | chr14:11672406-11672582 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 198-375 |
| Cow position: | chr14:3925939-3926120 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 55, 104 |
| Conread position: | 233-377 |
| Cow position: | chr14:10735020-10734878 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 46, 39 |
Show alignments to all cow chromosomes.