Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-130 |
| Cow position: | chr15:33464768-33464634 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-143 |
| Cow position: | chr15:32432536-32432391 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 79, 55 |
| Conread position: | 1-146 |
| Cow position: | chr15:50336194-50336339 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 48 |
| Conread position: | 1-150 |
| Cow position: | chr15:8949160-8949009 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 92, 16 |
| Conread position: | 1-163 |
| Cow position: | chr15:50547656-50547826 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 1-167 |
| Cow position: | chr15:20128825-20128653 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-178 |
| Cow position: | chr15:17005289-17005467 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 49, 33 |
| Conread position: | 1-189 |
| Cow position: | chr15:14470960-14470768 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-189 |
| Cow position: | chr15:16431803-16431993 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 153 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr15:22516466-22516653 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 81, 10 |
| Conread position: | 1-189 |
| Cow position: | chr15:45509765-45509574 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-193 |
| Cow position: | chr15:22548137-22548324 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 1-356 |
| Cow position: | chr15:33611860-33611495 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 253 |
| Conread position: | 1-362 |
| Cow position: | chr15:42551481-42551847 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 247 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 55, 141 |
| Conread position: | 1-368 |
| Cow position: | chr15:40217676-40218031 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 106, 42 |
| Conread position: | 1-373 |
| Cow position: | chr15:35449665-35449300 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 194 |
| Conread position: | 1-374 |
| Cow position: | chr15:45696534-45696167 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 7 |
| Conread position: | 1-375 |
| Cow position: | chr15:15632813-15632447 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 226, 37 |
| Conread position: | 1-375 |
| Cow position: | chr15:34170416-34170768 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 285, 63 |
| Conread position: | 1-377 |
| Cow position: | chr15:6447402-6447020 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 243 |
| Conread position: | 1-377 |
| Cow position: | chr15:14418141-14418522 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 2-375 |
| Cow position: | chr15:8439685-8439311 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 182 |
| Conread position: | 2-376 |
| Cow position: | chr15:18213010-18212654 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 53, 31 |
| Conread position: | 3-143 |
| Cow position: | chr15:6309341-6309488 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 114 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 3-189 |
| Cow position: | chr15:42659818-42660008 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-362 |
| Cow position: | chr15:18675788-18675432 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 151 |
| Conread position: | 4-371 |
| Cow position: | chr15:19728944-19728580 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 158 |
| Conread position: | 4-375 |
| Cow position: | chr15:44998010-44997636 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 184 |
| Conread position: | 4-375 |
| Cow position: | chr15:50442016-50442390 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 228 |
| Conread position: | 8-198 |
| Cow position: | chr15:17189908-17189723 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 36, 0 |
| Conread position: | 8-374 |
| Cow position: | chr15:25466159-25466525 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 148 |
| Conread position: | 8-375 |
| Cow position: | chr15:51241323-51240950 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 11-368 |
| Cow position: | chr15:1304369-1304730 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 230 |
| Conread position: | 16-348 |
| Cow position: | chr15:32660127-32659789 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 39 |
| Conread position: | 22-373 |
| Cow position: | chr15:49130339-49129990 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 191 |
| Conread position: | 25-178 |
| Cow position: | chr15:18280090-18280247 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 115 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 25-188 |
| Cow position: | chr15:47623306-47623141 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 55, 5 |
| Conread position: | 28-178 |
| Cow position: | chr15:12799492-12799342 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr15:19934690-19934854 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-375 |
| Cow position: | chr15:13994584-13994915 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 251 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 17, 29 |
| Conread position: | 32-189 |
| Cow position: | chr15:29882654-29882815 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 38-178 |
| Cow position: | chr15:8439150-8439006 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 54-377 |
| Cow position: | chr15:11759915-11759596 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 247 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 76-375 |
| Cow position: | chr15:10610187-10609892 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 89, 106 |
| Conread position: | 167-375 |
| Cow position: | chr15:48107490-48107281 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 20, 51 |
| Conread position: | 179-375 |
| Cow position: | chr15:870281-870476 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 34, 63 |
| Conread position: | 186-372 |
| Cow position: | chr15:22739701-22739884 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 110, 40 |
| Conread position: | 186-375 |
| Cow position: | chr15:16431969-16432153 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 191-362 |
| Cow position: | chr15:14470787-14470616 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 110, 32 |
| Conread position: | 191-375 |
| Cow position: | chr15:45002850-45003034 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 15, 25 |
| Conread position: | 191-377 |
| Cow position: | chr15:19934836-19935012 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 194-361 |
| Cow position: | chr15:33464392-33464227 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 124 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 140, 47 |
| Conread position: | 194-365 |
| Cow position: | chr15:675053-675221 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 121 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 194-372 |
| Cow position: | chr15:47623157-47622980 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 13, 76 |
| Conread position: | 194-375 |
| Cow position: | chr15:22548303-22548475 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 91, 21 |
| Conread position: | 194-375 |
| Cow position: | chr15:37975422-37975245 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 195-375 |
| Cow position: | chr15:42833631-42833454 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 111, 51 |
| Conread position: | 196-373 |
| Cow position: | chr15:22892923-22893099 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 204-375 |
| Cow position: | chr15:22516647-22516817 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 125 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 44 |
| Conread position: | 215-369 |
| Cow position: | chr15:45509568-45509410 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 216-377 |
| Cow position: | chr15:5844815-5844656 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 80, 52 |
| Conread position: | 225-353 |
| Cow position: | chr15:17189676-17189550 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 16, 0 |
Show alignments to all cow chromosomes.