Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-130 |
| Cow position: | chr16:3139959-3139826 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 1-137 |
| Cow position: | chr16:35291367-35291230 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 110, 0 |
| Conread position: | 1-143 |
| Cow position: | chr16:52619469-52619321 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 1-144 |
| Cow position: | chr16:7433689-7433552 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-144 |
| Cow position: | chr16:10933264-10933413 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 1-150 |
| Cow position: | chr16:12004517-12004667 (view UCSC Genome Browser custom track) |
| Alignm length: | 151 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 111, 0 |
| Conread position: | 1-167 |
| Cow position: | chr16:1631758-1631922 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 1-167 |
| Cow position: | chr16:35415590-35415418 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-178 |
| Cow position: | chr16:32454014-32454197 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-184 |
| Cow position: | chr16:50508183-50507999 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 82, 168 |
| Conread position: | 1-188 |
| Cow position: | chr16:24586945-24586753 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr16:3160191-3160003 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 108 |
| Conread position: | 1-189 |
| Cow position: | chr16:14182588-14182776 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 44, 86 |
| Conread position: | 1-189 |
| Cow position: | chr16:16076465-16076284 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 109, 65 |
| Conread position: | 1-189 |
| Cow position: | chr16:16088101-16087920 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 109, 65 |
| Conread position: | 1-197 |
| Cow position: | chr16:49911002-49910804 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 53, 95 |
| Conread position: | 1-198 |
| Cow position: | chr16:33439565-33439349 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 164 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-362 |
| Cow position: | chr16:10669323-10669684 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 265 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 183 |
| Conread position: | 1-362 |
| Cow position: | chr16:37100893-37100540 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 1-371 |
| Cow position: | chr16:34028318-34027954 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 247 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 60, 37 |
| Conread position: | 1-373 |
| Cow position: | chr16:13513515-13513140 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 245 |
| Conread position: | 1-373 |
| Cow position: | chr16:33435800-33435437 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 193 |
| Conread position: | 1-373 |
| Cow position: | chr16:40501636-40501988 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 144 |
| Conread position: | 1-374 |
| Cow position: | chr16:44460593-44460219 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 223 |
| Conread position: | 1-375 |
| Cow position: | chr16:412345-411979 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 77 |
| Conread position: | 1-375 |
| Cow position: | chr16:10178840-10179226 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 1-375 |
| Cow position: | chr16:15258326-15257948 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 252 |
| Conread position: | 1-375 |
| Cow position: | chr16:48895939-48895572 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 32 |
| Conread position: | 1-377 |
| Cow position: | chr16:40511291-40511640 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 3-167 |
| Cow position: | chr16:22243657-22243823 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 47, 160 |
| Conread position: | 3-178 |
| Cow position: | chr16:33531276-33531445 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 53, 71 |
| Conread position: | 3-189 |
| Cow position: | chr16:43861235-43861045 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 156 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 53, 175 |
| Conread position: | 4-150 |
| Cow position: | chr16:56209644-56209796 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 4-154 |
| Cow position: | chr16:47366524-47366373 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 4-362 |
| Cow position: | chr16:17162700-17163060 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 176 |
| Conread position: | 4-375 |
| Cow position: | chr16:571280-571648 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 5 |
| Conread position: | 4-375 |
| Cow position: | chr16:40522156-40521784 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 51 |
| Conread position: | 5-193 |
| Cow position: | chr16:11484792-11484598 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 149 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 6-188 |
| Cow position: | chr16:4141309-4141494 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 144 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 73, 120 |
| Conread position: | 7-373 |
| Cow position: | chr16:12092864-12093217 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 152 |
| Conread position: | 18-375 |
| Cow position: | chr16:33377323-33377682 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 169 |
| Conread position: | 22-167 |
| Cow position: | chr16:19263106-19262959 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 26-189 |
| Cow position: | chr16:10337613-10337447 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 5, 146 |
| Conread position: | 28-177 |
| Cow position: | chr16:17734307-17734460 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr16:6725299-6725137 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 30-177 |
| Cow position: | chr16:40415578-40415729 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 31-153 |
| Cow position: | chr16:28068301-28068177 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 101 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 23, 110 |
| Conread position: | 38-178 |
| Cow position: | chr16:21725943-21725798 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 39-177 |
| Cow position: | chr16:23385853-23385712 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 107 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 54-189 |
| Cow position: | chr16:34028248-34028114 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 106 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 100-375 |
| Cow position: | chr16:16724780-16724515 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 13, 135 |
| Conread position: | 186-373 |
| Cow position: | chr16:21725811-21725628 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 82, 60 |
| Conread position: | 188-375 |
| Cow position: | chr16:43861067-43860882 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 32, 54 |
| Conread position: | 190-375 |
| Cow position: | chr16:6725156-6724973 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 91, 74 |
| Conread position: | 191-374 |
| Cow position: | chr16:19942170-19941990 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 100, 68 |
| Conread position: | 191-375 |
| Cow position: | chr16:31128818-31128637 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 105, 24 |
| Conread position: | 191-375 |
| Cow position: | chr16:40415722-40415904 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 48, 68 |
| Conread position: | 194-375 |
| Cow position: | chr16:4141479-4141669 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 86, 48 |
| Conread position: | 194-375 |
| Cow position: | chr16:23923725-23923900 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 194-375 |
| Cow position: | chr16:33439374-33439200 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 194-375 |
| Cow position: | chr16:35445838-35445653 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 13, 49 |
| Conread position: | 194-375 |
| Cow position: | chr16:50231128-50231306 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 195-375 |
| Cow position: | chr16:11484618-11484438 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 48 |
| Conread position: | 196-373 |
| Cow position: | chr16:24586766-24586586 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 113 |
| Conread position: | 198-375 |
| Cow position: | chr16:56210182-56210358 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 70, 44 |
| Conread position: | 214-375 |
| Cow position: | chr16:23385695-23385537 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 82, 44 |
| Conread position: | 231-375 |
| Cow position: | chr16:51083858-51083715 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 27, 10 |
Show alignments to all cow chromosomes.