Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-159 |
| Cow position: | chr17:25103572-25103732 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-161 |
| Cow position: | chr17:27919023-27918861 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 109, 29 |
| Conread position: | 1-162 |
| Cow position: | chr17:36205106-36204940 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-178 |
| Cow position: | chr17:18597179-18597003 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 55, 12 |
| Conread position: | 1-188 |
| Cow position: | chr17:34377535-34377726 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 151 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-189 |
| Cow position: | chr17:6003196-6003003 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 14, 56 |
| Conread position: | 1-189 |
| Cow position: | chr17:16354698-16354883 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 87 |
| Conread position: | 1-189 |
| Cow position: | chr17:21920991-21920801 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 55, 127 |
| Conread position: | 1-189 |
| Cow position: | chr17:23907259-23907068 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 51, 110 |
| Conread position: | 1-189 |
| Cow position: | chr17:25650824-25650632 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-189 |
| Cow position: | chr17:35129911-35129722 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 149 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-189 |
| Cow position: | chr17:35449200-35449021 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 1-190 |
| Cow position: | chr17:5719311-5719120 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 73, 43 |
| Conread position: | 1-253 |
| Cow position: | chr17:24566268-24566517 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 31 |
| Conread position: | 1-266 |
| Cow position: | chr17:23463798-23463524 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 249 |
| Conread position: | 1-374 |
| Cow position: | chr17:10549257-10548900 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 212, 54 |
| Conread position: | 1-375 |
| Cow position: | chr17:34041032-34040667 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 182 |
| Conread position: | 1-375 |
| Cow position: | chr17:42794060-42793685 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 31 |
| Conread position: | 1-377 |
| Cow position: | chr17:21342655-21343031 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 205 |
| Conread position: | 1-377 |
| Cow position: | chr17:22460514-22460892 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 143 |
| Conread position: | 2-139 |
| Cow position: | chr17:44230744-44230885 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 110 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 16, 44 |
| Conread position: | 2-163 |
| Cow position: | chr17:4736177-4736016 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 145, 28 |
| Conread position: | 2-371 |
| Cow position: | chr17:41410014-41410359 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 285, 43 |
| Conread position: | 3-189 |
| Cow position: | chr17:10851403-10851593 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 3-189 |
| Cow position: | chr17:38043848-38043657 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 70, 0 |
| Conread position: | 3-361 |
| Cow position: | chr17:5821239-5820875 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 246 |
| Conread position: | 4-197 |
| Cow position: | chr17:44691645-44691831 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 18-174 |
| Cow position: | chr17:45798550-45798712 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 38-188 |
| Cow position: | chr17:24993558-24993713 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
| Conread position: | 38-375 |
| Cow position: | chr17:23468330-23467992 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 172, 145 |
| Conread position: | 49-375 |
| Cow position: | chr17:45884718-45884364 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 238 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 131, 208 |
| Conread position: | 53-375 |
| Cow position: | chr17:11075851-11076155 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 241 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 118 |
| Conread position: | 150-375 |
| Cow position: | chr17:6992784-6992566 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 70, 33 |
| Conread position: | 186-375 |
| Cow position: | chr17:35129746-35129556 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 27, 64 |
| Conread position: | 191-377 |
| Cow position: | chr17:25650651-25650458 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 193-375 |
| Cow position: | chr17:18597242-18597425 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 194-375 |
| Cow position: | chr17:21920817-21920640 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 74, 40 |
| Conread position: | 194-377 |
| Cow position: | chr17:30681243-30681067 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 0 |
| Conread position: | 194-377 |
| Cow position: | chr17:34377711-34377892 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 144 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 26, 54 |
| Conread position: | 195-361 |
| Cow position: | chr17:36204928-36204767 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 249-375 |
| Cow position: | chr17:36036375-36036249 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 100 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 43 |
Show alignments to all cow chromosomes.