Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-150 |
| Cow position: | chr18:14645061-14645209 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 114 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 55, 88 |
| Conread position: | 1-155 |
| Cow position: | chr18:48310529-48310374 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-188 |
| Cow position: | chr18:25700601-25700790 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 55, 20 |
| Conread position: | 1-189 |
| Cow position: | chr18:9017640-9017832 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 1-198 |
| Cow position: | chr18:13788205-13788405 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 162 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 55, 16 |
| Conread position: | 1-237 |
| Cow position: | chr18:11268479-11268720 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 180 |
| Alignm E-value: | 7.00649e-44 |
| Alignm gaps (pig, cow): | 57, 0 |
| Conread position: | 1-249 |
| Cow position: | chr18:20945275-20945534 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 193 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 44, 192 |
| Conread position: | 1-361 |
| Cow position: | chr18:51779797-51780151 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 206, 178 |
| Conread position: | 1-373 |
| Cow position: | chr18:51803883-51804251 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 38 |
| Conread position: | 1-375 |
| Cow position: | chr18:4699548-4699173 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 180 |
| Conread position: | 1-375 |
| Cow position: | chr18:29884982-29884617 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 180 |
| Conread position: | 1-375 |
| Cow position: | chr18:46865146-46864763 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 45 |
| Conread position: | 2-362 |
| Cow position: | chr18:12778975-12779329 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 139 |
| Conread position: | 2-375 |
| Cow position: | chr18:46883461-46883076 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 309 |
| Conread position: | 3-148 |
| Cow position: | chr18:4177032-4176883 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 3-178 |
| Cow position: | chr18:35086957-35087137 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 4-189 |
| Cow position: | chr18:3689303-3689486 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 64 |
| Conread position: | 4-369 |
| Cow position: | chr18:24798905-24799271 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 9 |
| Conread position: | 4-372 |
| Cow position: | chr18:24636170-24635816 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 33 |
| Conread position: | 8-162 |
| Cow position: | chr18:25694133-25694291 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 11-375 |
| Cow position: | chr18:30228699-30228345 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 25 |
| Conread position: | 28-177 |
| Cow position: | chr18:9257306-9257459 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr18:15807557-15807405 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr18:54128223-54128376 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 28-178 |
| Cow position: | chr18:40701765-40701921 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr18:8283835-8283999 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-189 |
| Cow position: | chr18:47294028-47293863 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 38-177 |
| Cow position: | chr18:15946544-15946402 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 51-375 |
| Cow position: | chr18:25670237-25670565 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 195 |
| Conread position: | 133-377 |
| Cow position: | chr18:32199339-32199108 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 153, 45 |
| Conread position: | 179-375 |
| Cow position: | chr18:43794450-43794643 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 138 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 28, 8 |
| Conread position: | 191-375 |
| Cow position: | chr18:15807412-15807230 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 96, 81 |
| Conread position: | 191-375 |
| Cow position: | chr18:25694709-25694528 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 89, 77 |
| Conread position: | 191-375 |
| Cow position: | chr18:37078736-37078918 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 114, 67 |
| Conread position: | 191-375 |
| Cow position: | chr18:49386311-49386130 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 191-375 |
| Cow position: | chr18:52440207-52440029 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 75, 0 |
| Conread position: | 191-376 |
| Cow position: | chr18:8283981-8284164 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 43, 51 |
| Conread position: | 194-361 |
| Cow position: | chr18:9017816-9017981 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 194-375 |
| Cow position: | chr18:3689469-3689649 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 194-375 |
| Cow position: | chr18:35087132-35087309 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 73, 46 |
| Conread position: | 194-375 |
| Cow position: | chr18:49879728-49879550 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 194-375 |
| Cow position: | chr18:54128372-54128551 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 102, 64 |
Show alignments to all cow chromosomes.