Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-124 |
| Cow position: | chr2:60318821-60318695 (view UCSC Genome Browser custom track) |
| Alignm length: | 128 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 76, 7 |
| Conread position: | 1-130 |
| Cow position: | chr2:65721301-65721171 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-158 |
| Cow position: | chr2:33630839-33630687 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 23, 0 |
| Conread position: | 1-167 |
| Cow position: | chr2:7293196-7293368 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-167 |
| Cow position: | chr2:46772580-46772752 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 1-168 |
| Cow position: | chr2:69133989-69133822 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 141 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 55, 97 |
| Conread position: | 1-169 |
| Cow position: | chr2:46566627-46566803 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-177 |
| Cow position: | chr2:80805114-80804932 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-188 |
| Cow position: | chr2:44979980-44979794 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 1-189 |
| Cow position: | chr2:25375658-25375847 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr2:36855123-36855315 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 109 |
| Conread position: | 1-189 |
| Cow position: | chr2:40021292-40021101 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 29 |
| Conread position: | 1-189 |
| Cow position: | chr2:44039587-44039768 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr2:44972486-44972670 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 41, 116 |
| Conread position: | 1-189 |
| Cow position: | chr2:46565210-46565020 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 155 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 56, 99 |
| Conread position: | 1-189 |
| Cow position: | chr2:49909354-49909170 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 55, 65 |
| Conread position: | 1-193 |
| Cow position: | chr2:24508708-24508908 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-193 |
| Cow position: | chr2:46567198-46567005 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 157 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 44, 147 |
| Conread position: | 1-307 |
| Cow position: | chr2:35978822-35978537 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 216 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 56, 79 |
| Conread position: | 1-362 |
| Cow position: | chr2:29191671-29192036 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 224 |
| Conread position: | 1-362 |
| Cow position: | chr2:85009753-85010112 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 43 |
| Conread position: | 1-368 |
| Cow position: | chr2:35971687-35971319 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 234 |
| Conread position: | 1-369 |
| Cow position: | chr2:45927898-45927524 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 1-372 |
| Cow position: | chr2:86327172-86326795 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 268 |
| Conread position: | 1-375 |
| Cow position: | chr2:35453194-35453561 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 194 |
| Conread position: | 1-375 |
| Cow position: | chr2:35984762-35984396 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 1-375 |
| Cow position: | chr2:39255101-39255453 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 138 |
| Conread position: | 1-375 |
| Cow position: | chr2:41779213-41778843 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 171 |
| Conread position: | 1-375 |
| Cow position: | chr2:66670936-66671310 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 243 |
| Conread position: | 1-375 |
| Cow position: | chr2:68426715-68427088 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 37 |
| Conread position: | 1-375 |
| Cow position: | chr2:69131332-69130944 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 257 |
| Conread position: | 1-375 |
| Cow position: | chr2:81185758-81186129 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 260, 177 |
| Conread position: | 1-375 |
| Cow position: | chr2:85383523-85383148 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 77 |
| Conread position: | 1-377 |
| Cow position: | chr2:40299841-40299487 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 2-178 |
| Cow position: | chr2:37365986-37366165 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 2-193 |
| Cow position: | chr2:23043627-23043433 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 54, 14 |
| Conread position: | 2-281 |
| Cow position: | chr2:40853139-40853419 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 54, 97 |
| Conread position: | 4-375 |
| Cow position: | chr2:15263789-15263421 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 179 |
| Conread position: | 6-166 |
| Cow position: | chr2:47150103-47149940 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 8-167 |
| Cow position: | chr2:41586282-41586118 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 8-359 |
| Cow position: | chr2:64308165-64308512 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 72, 138 |
| Conread position: | 12-375 |
| Cow position: | chr2:9946964-9946608 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 40 |
| Conread position: | 16-189 |
| Cow position: | chr2:29418485-29418664 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-30 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 21-168 |
| Cow position: | chr2:68157754-68157607 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 107 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 25-188 |
| Cow position: | chr2:1479873-1479710 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 20, 5 |
| Conread position: | 26-193 |
| Cow position: | chr2:34292833-34293006 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 30, 0 |
| Conread position: | 28-162 |
| Cow position: | chr2:44683630-44683768 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 106 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr2:12693093-12693246 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr2:19741111-19741264 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 54, 0 |
| Conread position: | 28-177 |
| Cow position: | chr2:28915994-28916147 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr2:68349830-68349983 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr2:7316676-7316840 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 52, 70 |
| Conread position: | 28-188 |
| Cow position: | chr2:43334942-43334777 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-189 |
| Cow position: | chr2:44546756-44546921 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 30-177 |
| Cow position: | chr2:82293853-82293702 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 113 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 38-188 |
| Cow position: | chr2:56300403-56300558 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 114 |
| Alignm E-value: | 9e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 38-189 |
| Cow position: | chr2:21336375-21336531 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 120 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 14, 0 |
| Conread position: | 47-170 |
| Cow position: | chr2:50965002-50965127 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 103 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 52-193 |
| Cow position: | chr2:36417150-36417295 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 73-374 |
| Cow position: | chr2:46205028-46204736 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 107, 0 |
| Conread position: | 99-375 |
| Cow position: | chr2:37079795-37080063 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 199 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 112-362 |
| Cow position: | chr2:83144834-83144593 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 108, 20 |
| Conread position: | 117-375 |
| Cow position: | chr2:3627031-3626786 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 178 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 73, 0 |
| Conread position: | 120-372 |
| Cow position: | chr2:39878111-39878347 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 72, 0 |
| Conread position: | 169-375 |
| Cow position: | chr2:44687774-44687572 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 145 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 113, 26 |
| Conread position: | 176-375 |
| Cow position: | chr2:36417255-36417453 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 11, 40 |
| Conread position: | 186-373 |
| Cow position: | chr2:23043461-23043278 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 98, 28 |
| Conread position: | 186-375 |
| Cow position: | chr2:3473098-3472911 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 105, 73 |
| Conread position: | 186-375 |
| Cow position: | chr2:25375823-25376009 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 137 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 85, 29 |
| Conread position: | 186-376 |
| Cow position: | chr2:34292977-34293165 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 34, 56 |
| Conread position: | 191-373 |
| Cow position: | chr2:47921427-47921607 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 46, 57 |
| Conread position: | 191-375 |
| Cow position: | chr2:12693239-12693421 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 191-375 |
| Cow position: | chr2:46565039-46564858 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 194-372 |
| Cow position: | chr2:1479726-1479551 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 78, 0 |
| Conread position: | 194-373 |
| Cow position: | chr2:24508888-24509062 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 80, 20 |
| Conread position: | 194-373 |
| Cow position: | chr2:43334793-43334615 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 129 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 194-375 |
| Cow position: | chr2:12768104-12767928 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 102, 47 |
| Conread position: | 194-375 |
| Cow position: | chr2:44546905-44547083 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 128 |
| Alignm E-value: | 8e-21 |
| Alignm gaps (pig, cow): | 102, 21 |
| Conread position: | 194-375 |
| Cow position: | chr2:45934122-45933941 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 27, 50 |
| Conread position: | 194-375 |
| Cow position: | chr2:47384095-47384274 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 13, 29 |
| Conread position: | 194-377 |
| Cow position: | chr2:20909245-20909067 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 48, 0 |
| Conread position: | 196-375 |
| Cow position: | chr2:69133821-69133644 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 137 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 90, 45 |
| Conread position: | 198-375 |
| Cow position: | chr2:36855303-36855478 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 69, 44 |
| Conread position: | 198-377 |
| Cow position: | chr2:33630667-33630491 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 9, 18 |
| Conread position: | 209-373 |
| Cow position: | chr2:68157596-68157435 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 32, 0 |
Show alignments to all cow chromosomes.