Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-150 |
| Cow position: | chr20:3077190-3077041 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 69, 31 |
| Conread position: | 1-174 |
| Cow position: | chr20:10508196-10508373 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 51, 155 |
| Conread position: | 1-177 |
| Cow position: | chr20:36326069-36325888 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 56, 131 |
| Conread position: | 1-178 |
| Cow position: | chr20:13124654-13124835 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 82, 0 |
| Conread position: | 1-178 |
| Cow position: | chr20:19490514-19490688 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 52, 88 |
| Conread position: | 1-189 |
| Cow position: | chr20:35434725-35434547 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 1-189 |
| Cow position: | chr20:36663568-36663749 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 105, 16 |
| Conread position: | 1-198 |
| Cow position: | chr20:13083465-13083258 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-340 |
| Cow position: | chr20:13282138-13282470 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 250 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 194 |
| Conread position: | 1-350 |
| Cow position: | chr20:40204168-40203807 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 1-361 |
| Cow position: | chr20:37911060-37910719 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 55, 29 |
| Conread position: | 1-373 |
| Cow position: | chr20:41157507-41157135 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 203 |
| Conread position: | 1-375 |
| Cow position: | chr20:2227227-2226856 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 145 |
| Conread position: | 1-375 |
| Cow position: | chr20:19030578-19030945 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 13 |
| Conread position: | 1-375 |
| Cow position: | chr20:35181708-35181318 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 165 |
| Conread position: | 2-189 |
| Cow position: | chr20:33667528-33667714 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 140 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 54, 36 |
| Conread position: | 2-373 |
| Cow position: | chr20:13079932-13080308 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 247 |
| Conread position: | 2-375 |
| Cow position: | chr20:22412909-22412565 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 266 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 37 |
| Conread position: | 3-178 |
| Cow position: | chr20:33773060-33773243 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 74, 33 |
| Conread position: | 3-189 |
| Cow position: | chr20:35251691-35251507 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 3-375 |
| Cow position: | chr20:37059330-37058955 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 185 |
| Conread position: | 4-121 |
| Cow position: | chr20:649240-649362 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 5-239 |
| Cow position: | chr20:33098347-33098103 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 88, 188 |
| Conread position: | 5-365 |
| Cow position: | chr20:24340166-24340520 (view UCSC Genome Browser custom track) |
| Alignm length: | 367 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 182 |
| Conread position: | 6-189 |
| Cow position: | chr20:1511626-1511809 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 48, 101 |
| Conread position: | 8-375 |
| Cow position: | chr20:8297881-8298256 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 179 |
| Conread position: | 12-267 |
| Cow position: | chr20:25038957-25039214 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 67, 43 |
| Conread position: | 25-176 |
| Cow position: | chr20:35962050-35962207 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 120 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 33, 0 |
| Conread position: | 28-177 |
| Cow position: | chr20:3531834-3531987 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr20:28137596-28137749 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr20:17674134-17673966 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 44-189 |
| Cow position: | chr20:31431262-31431117 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 117 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 56-375 |
| Cow position: | chr20:8964825-8964508 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 8 |
| Conread position: | 146-369 |
| Cow position: | chr20:649363-649583 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 171 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 73, 37 |
| Conread position: | 186-375 |
| Cow position: | chr20:13083292-13083107 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 191-375 |
| Cow position: | chr20:28820253-28820074 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 194-375 |
| Cow position: | chr20:23921515-23921338 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 194-375 |
| Cow position: | chr20:32949224-32949403 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 25, 46 |
| Conread position: | 194-375 |
| Cow position: | chr20:36325892-36325715 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 127 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 195-375 |
| Cow position: | chr20:42800848-42801031 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 11, 21 |
| Conread position: | 198-375 |
| Cow position: | chr20:35434559-35434385 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 245-375 |
| Cow position: | chr20:38032532-38032661 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 98 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 48, 0 |
Show alignments to all cow chromosomes.