Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-167 |
| Cow position: | chr27:3082813-3082985 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-169 |
| Cow position: | chr27:23190618-23190447 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 77, 50 |
| Conread position: | 1-169 |
| Cow position: | chr27:26813003-26813170 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 76, 39 |
| Conread position: | 1-177 |
| Cow position: | chr27:22567652-22567827 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 146 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 1-178 |
| Cow position: | chr27:530832-530654 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 134 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-178 |
| Cow position: | chr27:29996204-29996026 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 141 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 55, 38 |
| Conread position: | 1-187 |
| Cow position: | chr27:14181569-14181750 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 144 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 57, 125 |
| Conread position: | 1-188 |
| Cow position: | chr27:22803773-22803595 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 179, 23 |
| Conread position: | 1-189 |
| Cow position: | chr27:3694934-3695122 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 99, 43 |
| Conread position: | 1-189 |
| Cow position: | chr27:7086426-7086240 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 153 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 1-189 |
| Cow position: | chr27:20754256-20754447 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 57, 110 |
| Conread position: | 1-189 |
| Cow position: | chr27:22123773-22123966 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 77, 29 |
| Conread position: | 1-189 |
| Cow position: | chr27:23877708-23877519 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 129, 0 |
| Conread position: | 1-231 |
| Cow position: | chr27:29358983-29358749 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 1-312 |
| Cow position: | chr27:14152142-14151825 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 282 |
| Conread position: | 1-369 |
| Cow position: | chr27:29498894-29498528 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 72 |
| Conread position: | 1-375 |
| Cow position: | chr27:3912223-3911849 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 117 |
| Conread position: | 1-375 |
| Cow position: | chr27:23052771-23052397 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 244 |
| Conread position: | 1-375 |
| Cow position: | chr27:26501867-26502230 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 191 |
| Conread position: | 3-188 |
| Cow position: | chr27:14680976-14681165 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 150 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 77, 0 |
| Conread position: | 3-189 |
| Cow position: | chr27:14333576-14333763 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 53, 21 |
| Conread position: | 3-375 |
| Cow position: | chr27:14139067-14139440 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 231 |
| Conread position: | 4-375 |
| Cow position: | chr27:18109574-18109947 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 13 |
| Conread position: | 4-377 |
| Cow position: | chr27:7596345-7596730 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 262 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 74, 51 |
| Conread position: | 28-174 |
| Cow position: | chr27:2392591-2392441 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-178 |
| Cow position: | chr27:21601307-21601153 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 112 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 28-188 |
| Cow position: | chr27:30988144-30988309 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 120 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 28-375 |
| Cow position: | chr27:58224-57893 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 244 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 126-375 |
| Cow position: | chr27:7633469-7633220 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 163, 27 |
| Conread position: | 169-375 |
| Cow position: | chr27:14333720-14333926 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 186-362 |
| Cow position: | chr27:22803619-22803446 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 125 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 186-367 |
| Cow position: | chr27:29996039-29995860 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 34, 61 |
| Conread position: | 191-373 |
| Cow position: | chr27:2392445-2392264 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 129 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 17, 106 |
| Conread position: | 193-361 |
| Cow position: | chr27:23877536-23877375 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 193-369 |
| Cow position: | chr27:7133082-7133259 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 125 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 14, 23 |
| Conread position: | 193-375 |
| Cow position: | chr27:7158183-7158362 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 94, 75 |
| Conread position: | 194-360 |
| Cow position: | chr27:7150024-7150186 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 120 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 194-375 |
| Cow position: | chr27:7141889-7142069 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 98, 74 |
| Conread position: | 194-375 |
| Cow position: | chr27:30988293-30988472 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 86, 66 |
| Conread position: | 194-376 |
| Cow position: | chr27:30247140-30246961 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 92, 64 |
| Conread position: | 195-373 |
| Cow position: | chr27:22568036-22568213 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 195-375 |
| Cow position: | chr27:14681151-14681330 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 142 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 25, 47 |
| Conread position: | 198-375 |
| Cow position: | chr27:10584600-10584773 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 85, 63 |
| Conread position: | 210-375 |
| Cow position: | chr27:7599258-7599421 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 76, 31 |
| Conread position: | 214-375 |
| Cow position: | chr27:18467550-18467709 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 117 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 82, 44 |
Show alignments to all cow chromosomes.