Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-114 |
| Cow position: | chr29:20706604-20706489 (view UCSC Genome Browser custom track) |
| Alignm length: | 116 |
| Alignm identity: | 98 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-169 |
| Cow position: | chr29:31210326-31210161 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 108, 88 |
| Conread position: | 1-172 |
| Cow position: | chr29:31218712-31218543 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 127 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 108, 88 |
| Conread position: | 1-174 |
| Cow position: | chr29:8940683-8940859 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 1-178 |
| Cow position: | chr29:2198962-2199127 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 1-203 |
| Cow position: | chr29:42198624-42198835 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 44, 111 |
| Conread position: | 1-218 |
| Cow position: | chr29:31236521-31236298 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 214 |
| Conread position: | 1-278 |
| Cow position: | chr29:6389947-6389666 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 19 |
| Conread position: | 1-315 |
| Cow position: | chr29:30691057-30691374 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 226 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 44, 154 |
| Conread position: | 1-368 |
| Cow position: | chr29:12897102-12897454 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 129 |
| Conread position: | 1-372 |
| Cow position: | chr29:36638875-36638525 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 119 |
| Conread position: | 1-375 |
| Cow position: | chr29:5523410-5523052 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 143 |
| Conread position: | 1-375 |
| Cow position: | chr29:5624697-5624321 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 158 |
| Conread position: | 1-375 |
| Cow position: | chr29:11449769-11450131 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 195 |
| Conread position: | 1-375 |
| Cow position: | chr29:15852610-15852230 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 124 |
| Conread position: | 1-375 |
| Cow position: | chr29:18182942-18183306 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 215 |
| Conread position: | 1-375 |
| Cow position: | chr29:28794856-28794479 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 245 |
| Conread position: | 1-375 |
| Cow position: | chr29:33435248-33434867 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 249 |
| Conread position: | 2-189 |
| Cow position: | chr29:38051086-38051278 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 54, 129 |
| Conread position: | 2-365 |
| Cow position: | chr29:43994375-43994028 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 100 |
| Conread position: | 2-369 |
| Cow position: | chr29:26596996-26596644 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 118 |
| Conread position: | 3-362 |
| Cow position: | chr29:30723603-30723247 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 177 |
| Conread position: | 4-375 |
| Cow position: | chr29:28847070-28847444 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 41 |
| Conread position: | 5-178 |
| Cow position: | chr29:30714837-30715008 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 105, 84 |
| Conread position: | 28-162 |
| Cow position: | chr29:420850-420712 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 108 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr29:30651460-30651614 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr29:36571161-36571009 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 31-162 |
| Cow position: | chr29:44693386-44693251 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 14, 25 |
| Conread position: | 52-205 |
| Cow position: | chr29:26897842-26897994 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 118 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 143, 0 |
| Conread position: | 72-375 |
| Cow position: | chr29:17102548-17102250 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 121-375 |
| Cow position: | chr29:16478384-16478637 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 0 |
| Conread position: | 191-375 |
| Cow position: | chr29:14499319-14499500 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 191-375 |
| Cow position: | chr29:17212240-17212062 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 191-375 |
| Cow position: | chr29:20706177-20706004 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 114, 51 |
| Conread position: | 194-322 |
| Cow position: | chr29:38051262-38051387 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 102 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 83, 43 |
| Conread position: | 212-375 |
| Cow position: | chr29:32294343-32294505 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 75, 46 |
| Conread position: | 215-375 |
| Cow position: | chr29:31236111-31235953 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 64, 26 |
Show alignments to all cow chromosomes.