Cow genome map

Conread name: End1-UMC-pd10en3-010-f05

Conread position: 1-146
Cow position: chr3:28593354-28593208 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 52, 81

Conread position: 1-146
Cow position: chr3:41158624-41158770 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 0

Conread position: 1-150
Cow position: chr3:28500763-28500912 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 116
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 110, 134

Conread position: 1-175
Cow position: chr3:83785807-83785624 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 51, 164

Conread position: 1-176
Cow position: chr3:49006067-49006243 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 145
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 55, 0

Conread position: 1-178
Cow position: chr3:7809722-7809893 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 131
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 45, 21

Conread position: 1-178
Cow position: chr3:56308459-56308286 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 139
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 55, 25

Conread position: 1-188
Cow position: chr3:28207594-28207774 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 179, 23

Conread position: 1-189
Cow position: chr3:2059758-2059943 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 139
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 55, 123

Conread position: 1-189
Cow position: chr3:5619159-5619342 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 108, 29

Conread position: 1-189
Cow position: chr3:6190095-6190285 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 79, 154

Conread position: 1-189
Cow position: chr3:22696939-22696746 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 153
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 37, 0

Conread position: 1-189
Cow position: chr3:23846571-23846760 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 76, 153

Conread position: 1-189
Cow position: chr3:58306753-58306941 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 147
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 55, 44

Conread position: 1-189
Cow position: chr3:84919100-84919291 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 151
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 51, 146

Conread position: 1-190
Cow position: chr3:28464836-28464644 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 147
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 49

Conread position: 1-190
Cow position: chr3:33020730-33020540 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 142
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 77, 128

Conread position: 1-193
Cow position: chr3:45838736-45838934 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 148
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 51, 176

Conread position: 1-201
Cow position: chr3:3251364-3251560 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 156
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 55, 90

Conread position: 1-233
Cow position: chr3:11952816-11952581 (view UCSC Genome Browser custom track)
Alignm length: 237
Alignm identity: 177
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 77, 186

Conread position: 1-341
Cow position: chr3:10215515-10215851 (view UCSC Genome Browser custom track)
Alignm length: 351
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 78, 139

Conread position: 1-361
Cow position: chr3:7810443-7810098 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 276
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 36

Conread position: 1-375
Cow position: chr3:10688146-10687770 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 187

Conread position: 1-375
Cow position: chr3:85149852-85150206 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 263
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 217, 38

Conread position: 1-377
Cow position: chr3:1839525-1839902 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 288
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 10

Conread position: 1-377
Cow position: chr3:6762513-6762126 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 293
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 195

Conread position: 1-377
Cow position: chr3:28692334-28691949 (view UCSC Genome Browser custom track)
Alignm length: 400
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 56, 90

Conread position: 1-377
Cow position: chr3:59205362-59205725 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 80, 193

Conread position: 2-167
Cow position: chr3:25899352-25899181 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 137
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 54, 0

Conread position: 3-189
Cow position: chr3:36783613-36783426 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 142
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 75, 59

Conread position: 3-375
Cow position: chr3:19696357-19696712 (view UCSC Genome Browser custom track)
Alignm length: 374
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 78

Conread position: 4-171
Cow position: chr3:77943735-77943901 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 132
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 76, 39

Conread position: 4-172
Cow position: chr3:82515868-82515696 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 72, 51

Conread position: 4-188
Cow position: chr3:28485323-28485502 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 143
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 6, 21

Conread position: 4-253
Cow position: chr3:6049401-6049652 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 183

Conread position: 4-281
Cow position: chr3:65526190-65525914 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 4-375
Cow position: chr3:17642018-17641637 (view UCSC Genome Browser custom track)
Alignm length: 389
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 76, 47

Conread position: 6-167
Cow position: chr3:14933070-14933234 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 120
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 49, 0

Conread position: 6-188
Cow position: chr3:7812536-7812712 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 39, 18

Conread position: 16-375
Cow position: chr3:49850174-49849819 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 283
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 57

Conread position: 24-189
Cow position: chr3:48573163-48573333 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 123
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 6

Conread position: 25-188
Cow position: chr3:31360343-31360180 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 129
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 20, 5

Conread position: 28-174
Cow position: chr3:3253905-3253755 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 113
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 52, 0

Conread position: 28-174
Cow position: chr3:22698972-22699118 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 17, 28

Conread position: 28-177
Cow position: chr3:28443625-28443778 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 114
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 0

Conread position: 28-184
Cow position: chr3:48095426-48095266 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 122
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 17, 28

Conread position: 28-188
Cow position: chr3:14296138-14296302 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 17, 28

Conread position: 28-188
Cow position: chr3:78548990-78548826 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 17, 29

Conread position: 28-368
Cow position: chr3:6645371-6645689 (view UCSC Genome Browser custom track)
Alignm length: 342
Alignm identity: 227
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 263, 105

Conread position: 30-177
Cow position: chr3:32168235-32168384 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 114
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 50, 14

Conread position: 46-179
Cow position: chr3:28724623-28724762 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 33, 0

Conread position: 47-187
Cow position: chr3:60067695-60067839 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 33, 0

Conread position: 47-372
Cow position: chr3:7830598-7830268 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 137

Conread position: 48-188
Cow position: chr3:34868191-34868334 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 113
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 111

Conread position: 48-193
Cow position: chr3:24773082-24773235 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 32, 125

Conread position: 48-375
Cow position: chr3:11030508-11030180 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 247
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 9

Conread position: 53-375
Cow position: chr3:2306474-2306153 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 68

Conread position: 55-327
Cow position: chr3:9195098-9194818 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 129

Conread position: 59-174
Cow position: chr3:81391324-81391209 (view UCSC Genome Browser custom track)
Alignm length: 116
Alignm identity: 96
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 70-321
Cow position: chr3:44437961-44437713 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 184
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 106, 0

Conread position: 77-375
Cow position: chr3:74711151-74711436 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 200, 106

Conread position: 112-373
Cow position: chr3:53578523-53578262 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 72

Conread position: 164-362
Cow position: chr3:78548870-78548677 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 139
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 132, 15

Conread position: 167-377
Cow position: chr3:30988066-30988274 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 71, 0

Conread position: 168-375
Cow position: chr3:60067801-60067998 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 182-362
Cow position: chr3:77332930-77332748 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 128
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 86, 0

Conread position: 183-369
Cow position: chr3:56305091-56305276 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 135
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 38, 65

Conread position: 186-362
Cow position: chr3:24797407-24797597 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 140
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 186-373
Cow position: chr3:28724748-28724927 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 131
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 56, 0

Conread position: 186-375
Cow position: chr3:22696771-22696585 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 145
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 13, 56

Conread position: 186-375
Cow position: chr3:28462502-28462316 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 14, 0

Conread position: 186-375
Cow position: chr3:28485478-28485665 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 139
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 21, 30

Conread position: 186-375
Cow position: chr3:36780723-36780536 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 148
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 47, 56

Conread position: 187-375
Cow position: chr3:6190263-6190448 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 141
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 92, 13

Conread position: 187-377
Cow position: chr3:24773208-24773394 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 0

Conread position: 191-374
Cow position: chr3:32168377-32168558 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 89, 24

Conread position: 191-375
Cow position: chr3:3803837-3804019 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 131
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 77, 98

Conread position: 191-375
Cow position: chr3:33020560-33020377 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 20, 51

Conread position: 191-375
Cow position: chr3:35352583-35352399 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 138
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 96, 77

Conread position: 191-375
Cow position: chr3:38124849-38124667 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 102, 77

Conread position: 191-375
Cow position: chr3:42936041-42935860 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 24

Conread position: 191-377
Cow position: chr3:28207755-28207940 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 141
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 91, 50

Conread position: 194-369
Cow position: chr3:34868319-34868497 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 134
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 25, 48

Conread position: 194-371
Cow position: chr3:2059927-2060098 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 139
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 21, 0

Conread position: 194-372
Cow position: chr3:48091119-48090944 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 70, 0

Conread position: 194-375
Cow position: chr3:14296286-14296465 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 102, 74

Conread position: 194-375
Cow position: chr3:48037428-48037248 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 157, 74

Conread position: 194-375
Cow position: chr3:60508072-60507893 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 130
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 102, 74

Conread position: 194-375
Cow position: chr3:75097698-75097518 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 132
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 107, 48

Conread position: 194-376
Cow position: chr3:29705532-29705713 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 134
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 13, 22

Conread position: 195-362
Cow position: chr3:56308025-56307859 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 26, 47

Conread position: 195-375
Cow position: chr3:36783441-36783260 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 138
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 77, 46

Conread position: 195-375
Cow position: chr3:58306926-58307104 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 65, 47

Conread position: 198-375
Cow position: chr3:82508320-82508144 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 128
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 43, 101

Conread position: 214-375
Cow position: chr3:22702630-22702471 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 122
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 137, 27

Conread position: 215-375
Cow position: chr3:81391200-81391042 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 123
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 88, 26

Show alignments to all cow chromosomes.