Cow genome map

Conread name: End1-UMC-pd10en3-010-f05

Conread position: 1-138
Cow position: chr4:64369705-64369570 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 51, 73

Conread position: 1-145
Cow position: chr4:28223867-28224014 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 117
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 17, 0

Conread position: 1-163
Cow position: chr4:65944645-65944480 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 133
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 55, 0

Conread position: 1-167
Cow position: chr4:5228884-5228713 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 135
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 76, 0

Conread position: 1-167
Cow position: chr4:12226695-12226863 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 135
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 55, 0

Conread position: 1-167
Cow position: chr4:14528460-14528288 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 55, 0

Conread position: 1-167
Cow position: chr4:48235973-48236144 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 133
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 55, 0

Conread position: 1-184
Cow position: chr4:29905717-29905540 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 1-188
Cow position: chr4:57725768-57725583 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 140
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 82, 24

Conread position: 1-189
Cow position: chr4:11169101-11169294 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 56, 115

Conread position: 1-189
Cow position: chr4:13150370-13150561 (view UCSC Genome Browser custom track)
Alignm length: 192
Alignm identity: 141
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 0

Conread position: 1-189
Cow position: chr4:28285872-28286068 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 150
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 79, 43

Conread position: 1-189
Cow position: chr4:43420771-43420579 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 156
Alignm E-value: 8.00141e-43
Alignm gaps (pig, cow): 70, 30

Conread position: 1-189
Cow position: chr4:44085990-44086182 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 151
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 79, 0

Conread position: 1-189
Cow position: chr4:57717235-57717049 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 146
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 44, 23

Conread position: 1-193
Cow position: chr4:3463810-3464007 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 150
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 73, 0

Conread position: 1-193
Cow position: chr4:45451374-45451557 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 149
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 100, 23

Conread position: 1-202
Cow position: chr4:32024776-32024575 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 156
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 44, 118

Conread position: 1-364
Cow position: chr4:63394151-63393805 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 79

Conread position: 1-364
Cow position: chr4:63398748-63398399 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 79

Conread position: 1-375
Cow position: chr4:42980957-42981334 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 295
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 206

Conread position: 1-375
Cow position: chr4:66835750-66836127 (view UCSC Genome Browser custom track)
Alignm length: 382
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 167

Conread position: 1-375
Cow position: chr4:67567985-67568331 (view UCSC Genome Browser custom track)
Alignm length: 377
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 23

Conread position: 1-377
Cow position: chr4:18006276-18005892 (view UCSC Genome Browser custom track)
Alignm length: 391
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 55

Conread position: 2-150
Cow position: chr4:12652233-12652079 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 124
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 50, 0

Conread position: 2-169
Cow position: chr4:14576314-14576149 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 127
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 78, 22

Conread position: 3-193
Cow position: chr4:59531620-59531815 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 152
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 42, 0

Conread position: 3-369
Cow position: chr4:14480342-14479983 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 145

Conread position: 3-375
Cow position: chr4:61152090-61152465 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 287
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 212

Conread position: 4-189
Cow position: chr4:44621696-44621885 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 52, 124

Conread position: 4-212
Cow position: chr4:42485369-42485574 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 161
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 40, 0

Conread position: 4-218
Cow position: chr4:3868617-3868833 (view UCSC Genome Browser custom track)
Alignm length: 220
Alignm identity: 166
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 73, 102

Conread position: 4-360
Cow position: chr4:58431800-58431439 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 281
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 48

Conread position: 4-375
Cow position: chr4:43465758-43465391 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 278
Alignm E-value: 0
Alignm gaps (pig, cow): 215, 93

Conread position: 4-377
Cow position: chr4:54142104-54141736 (view UCSC Genome Browser custom track)
Alignm length: 380
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 82, 40

Conread position: 6-193
Cow position: chr4:12701911-12702098 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 145
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 174, 45

Conread position: 12-375
Cow position: chr4:38925538-38925906 (view UCSC Genome Browser custom track)
Alignm length: 370
Alignm identity: 272
Alignm E-value: 0
Alignm gaps (pig, cow): 144, 172

Conread position: 18-177
Cow position: chr4:41123345-41123183 (view UCSC Genome Browser custom track)
Alignm length: 166
Alignm identity: 124
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 27, 11

Conread position: 18-178
Cow position: chr4:10980267-10980102 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 125
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 35, 82

Conread position: 28-162
Cow position: chr4:7983390-7983523 (view UCSC Genome Browser custom track)
Alignm length: 135
Alignm identity: 102
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 59, 0

Conread position: 28-174
Cow position: chr4:47132487-47132637 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 117
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 17, 28

Conread position: 28-177
Cow position: chr4:7160627-7160474 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 115
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 0

Conread position: 28-177
Cow position: chr4:23122595-23122442 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 120
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 17, 28

Conread position: 28-177
Cow position: chr4:67562698-67562545 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 17, 28

Conread position: 28-189
Cow position: chr4:60094035-60093870 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 123
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 17, 28

Conread position: 38-163
Cow position: chr4:44754006-44753875 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 104
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 18, 0

Conread position: 38-178
Cow position: chr4:64673627-64673483 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 32, 0

Conread position: 94-189
Cow position: chr4:36494297-36494202 (view UCSC Genome Browser custom track)
Alignm length: 96
Alignm identity: 80
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 128-373
Cow position: chr4:10419252-10419013 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 169
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 80, 0

Conread position: 181-376
Cow position: chr4:41123200-41123007 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 140
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 124, 77

Conread position: 183-368
Cow position: chr4:52325811-52325624 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 137
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 109, 58

Conread position: 184-375
Cow position: chr4:45451526-45451714 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 139
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 38, 60

Conread position: 186-365
Cow position: chr4:36494226-36494048 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 34, 56

Conread position: 186-375
Cow position: chr4:63586179-63585991 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 134
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 62, 84

Conread position: 187-375
Cow position: chr4:12702070-12702257 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 95, 54

Conread position: 191-375
Cow position: chr4:23122449-23122267 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 132
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 16, 25

Conread position: 191-375
Cow position: chr4:47132633-47132815 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 105, 67

Conread position: 193-377
Cow position: chr4:14576146-14575967 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 13, 23

Conread position: 194-361
Cow position: chr4:29905551-29905388 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 122
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 32, 0

Conread position: 194-362
Cow position: chr4:43420595-43420430 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 138
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 47, 0

Conread position: 194-373
Cow position: chr4:44086166-44086338 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 138
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 157, 48

Conread position: 194-375
Cow position: chr4:13150545-13150721 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 131
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 74, 48

Conread position: 194-375
Cow position: chr4:31596618-31596439 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 125
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 67, 0

Conread position: 194-375
Cow position: chr4:44621869-44622040 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 131
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 21, 0

Conread position: 194-375
Cow position: chr4:57725599-57725421 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 129
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 112, 47

Conread position: 194-375
Cow position: chr4:64152715-64152894 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 132
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 102, 74

Conread position: 194-376
Cow position: chr4:60093886-60093709 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 63, 0

Conread position: 195-375
Cow position: chr4:14424109-14423929 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 127
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 42, 79

Conread position: 196-375
Cow position: chr4:7983529-7983706 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 129
Alignm E-value: 9e-24
Alignm gaps (pig, cow): 82, 64

Conread position: 201-375
Cow position: chr4:65944464-65944293 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 123
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 40, 0

Conread position: 224-375
Cow position: chr4:48236220-48236367 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 120
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 81, 17

Show alignments to all cow chromosomes.