Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-143 |
| Cow position: | chr5:31511929-31512070 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 108, 37 |
| Conread position: | 1-143 |
| Cow position: | chr5:47991481-47991630 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 117 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-159 |
| Cow position: | chr5:12219376-12219216 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 123 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 27, 40 |
| Conread position: | 1-163 |
| Cow position: | chr5:24888805-24888639 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 128 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 91 |
| Conread position: | 1-167 |
| Cow position: | chr5:8764509-8764337 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-167 |
| Cow position: | chr5:18775404-18775568 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 126 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 49, 88 |
| Conread position: | 1-167 |
| Cow position: | chr5:47996278-47996451 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 134 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-167 |
| Cow position: | chr5:48135870-48135706 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 54, 88 |
| Conread position: | 1-176 |
| Cow position: | chr5:73480129-73480306 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 79, 98 |
| Conread position: | 1-178 |
| Cow position: | chr5:47358004-47357834 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 86, 23 |
| Conread position: | 1-189 |
| Cow position: | chr5:21043113-21042924 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 79, 50 |
| Conread position: | 1-189 |
| Cow position: | chr5:23742582-23742395 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 12, 80 |
| Conread position: | 1-189 |
| Cow position: | chr5:37372282-37372082 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 1-193 |
| Cow position: | chr5:49920519-49920323 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 146 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 73, 29 |
| Conread position: | 1-249 |
| Cow position: | chr5:42183194-42183444 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 187 |
| Conread position: | 1-288 |
| Cow position: | chr5:2441068-2441359 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 186 |
| Conread position: | 1-295 |
| Cow position: | chr5:21514655-21514942 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 78 |
| Conread position: | 1-342 |
| Cow position: | chr5:47619376-47619717 (view UCSC Genome Browser custom track) |
| Alignm length: | 346 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 155 |
| Conread position: | 1-359 |
| Cow position: | chr5:9969701-9969360 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 191 |
| Conread position: | 1-362 |
| Cow position: | chr5:39800579-39800949 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 44 |
| Conread position: | 1-365 |
| Cow position: | chr5:29536866-29537243 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 198 |
| Conread position: | 1-372 |
| Cow position: | chr5:72939447-72939818 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 186 |
| Conread position: | 1-375 |
| Cow position: | chr5:19914734-19914359 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 289 |
| Conread position: | 1-375 |
| Cow position: | chr5:29076174-29075805 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 148 |
| Conread position: | 1-375 |
| Cow position: | chr5:42785406-42785775 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 138 |
| Conread position: | 1-375 |
| Cow position: | chr5:47771686-47772059 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 32 |
| Conread position: | 1-375 |
| Cow position: | chr5:47839775-47840149 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 79, 43 |
| Conread position: | 1-375 |
| Cow position: | chr5:48275063-48275431 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 60 |
| Conread position: | 1-375 |
| Cow position: | chr5:70705210-70704854 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 256 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 350, 45 |
| Conread position: | 1-376 |
| Cow position: | chr5:23628661-23628287 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 130 |
| Conread position: | 1-377 |
| Cow position: | chr5:66106851-66106478 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 218 |
| Conread position: | 2-375 |
| Cow position: | chr5:18585201-18584814 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 128 |
| Conread position: | 3-162 |
| Cow position: | chr5:64039090-64038933 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 128 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 42, 19 |
| Conread position: | 3-375 |
| Cow position: | chr5:25896206-25896572 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 193 |
| Conread position: | 4-178 |
| Cow position: | chr5:42820411-42820233 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 4-281 |
| Cow position: | chr5:64796376-64796094 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 183 |
| Conread position: | 4-369 |
| Cow position: | chr5:63515683-63516045 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 47 |
| Conread position: | 4-375 |
| Cow position: | chr5:30204753-30204379 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 16 |
| Conread position: | 4-375 |
| Cow position: | chr5:64103792-64104162 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 10 |
| Conread position: | 8-187 |
| Cow position: | chr5:70720556-70720736 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 48, 96 |
| Conread position: | 11-375 |
| Cow position: | chr5:75573184-75573549 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 270 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 66, 212 |
| Conread position: | 25-177 |
| Cow position: | chr5:24456232-24456388 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 27-188 |
| Cow position: | chr5:67962576-67962410 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 53, 0 |
| Conread position: | 28-174 |
| Cow position: | chr5:13421134-13420984 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 113 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr5:46273191-46273344 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 116 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr5:60969419-60969253 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 123 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 29-216 |
| Cow position: | chr5:42099873-42100060 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 157, 78 |
| Conread position: | 30-177 |
| Cow position: | chr5:73887784-73887935 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 37-350 |
| Cow position: | chr5:45500347-45500642 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 207 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 73, 93 |
| Conread position: | 38-177 |
| Cow position: | chr5:9368815-9368672 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 107 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 49-375 |
| Cow position: | chr5:18710049-18709727 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 8, 31 |
| Conread position: | 187-375 |
| Cow position: | chr5:70720715-70720896 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 191-375 |
| Cow position: | chr5:9368679-9368497 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 83, 0 |
| Conread position: | 191-375 |
| Cow position: | chr5:45198772-45198954 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 17, 52 |
| Conread position: | 194-361 |
| Cow position: | chr5:35335282-35335447 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 127 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 12, 22 |
| Conread position: | 194-375 |
| Cow position: | chr5:21042940-21042763 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 86, 21 |
| Conread position: | 194-375 |
| Cow position: | chr5:27995946-27995768 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 136 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 86, 13 |
| Conread position: | 194-375 |
| Cow position: | chr5:58439326-58439146 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 74, 47 |
| Conread position: | 194-375 |
| Cow position: | chr5:60969269-60969089 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 100, 78 |
| Conread position: | 194-377 |
| Cow position: | chr5:47357839-47357660 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 195-375 |
| Cow position: | chr5:34150770-34150947 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 92, 65 |
| Conread position: | 214-370 |
| Cow position: | chr5:69133223-69133067 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 111, 27 |
Show alignments to all cow chromosomes.