Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-143 |
| Cow position: | chr7:16140180-16140031 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-145 |
| Cow position: | chr7:31108144-31108289 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 112 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 108, 0 |
| Conread position: | 1-150 |
| Cow position: | chr7:13800916-13801071 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 1-167 |
| Cow position: | chr7:3662035-3662207 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-167 |
| Cow position: | chr7:18107726-18107894 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 136 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-178 |
| Cow position: | chr7:3916552-3916369 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-188 |
| Cow position: | chr7:57380254-57380446 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 69, 0 |
| Conread position: | 1-189 |
| Cow position: | chr7:25828891-25828698 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 56, 0 |
| Conread position: | 1-189 |
| Cow position: | chr7:30544618-30544811 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr7:38810922-38811115 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr7:47886471-47886668 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 161 |
| Conread position: | 1-232 |
| Cow position: | chr7:19930137-19929907 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 179 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 44, 209 |
| Conread position: | 1-276 |
| Cow position: | chr7:11157908-11157625 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 55, 13 |
| Conread position: | 1-362 |
| Cow position: | chr7:41084625-41084273 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 94 |
| Conread position: | 1-372 |
| Cow position: | chr7:38470558-38470190 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 214 |
| Conread position: | 1-372 |
| Cow position: | chr7:40909591-40909967 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 1-375 |
| Cow position: | chr7:161416-161795 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 246 |
| Conread position: | 1-375 |
| Cow position: | chr7:33596884-33597262 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 249 |
| Conread position: | 1-375 |
| Cow position: | chr7:50718595-50718214 (view UCSC Genome Browser custom track) |
| Alignm length: | 384 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 248 |
| Conread position: | 1-375 |
| Cow position: | chr7:50754621-50754974 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 146 |
| Conread position: | 2-202 |
| Cow position: | chr7:44617299-44617107 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 91, 0 |
| Conread position: | 3-174 |
| Cow position: | chr7:937028-936856 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 42, 100 |
| Conread position: | 3-375 |
| Cow position: | chr7:25804916-25804545 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 179 |
| Conread position: | 4-375 |
| Cow position: | chr7:9349053-9348686 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 168 |
| Conread position: | 4-375 |
| Cow position: | chr7:38470061-38469688 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 52 |
| Conread position: | 6-365 |
| Cow position: | chr7:2753224-2752885 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 64, 49 |
| Conread position: | 8-146 |
| Cow position: | chr7:37293252-37293392 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 13-189 |
| Cow position: | chr7:40899971-40900151 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 27-188 |
| Cow position: | chr7:55974984-55975145 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 153, 34 |
| Conread position: | 28-169 |
| Cow position: | chr7:62014800-62014941 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 111 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-177 |
| Cow position: | chr7:5015167-5015014 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 30-333 |
| Cow position: | chr7:66164578-66164873 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 15, 26 |
| Conread position: | 38-177 |
| Cow position: | chr7:49058606-49058749 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 48-340 |
| Cow position: | chr7:63334739-63334443 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 32, 145 |
| Conread position: | 73-374 |
| Cow position: | chr7:44186661-44186381 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 198, 17 |
| Conread position: | 110-360 |
| Cow position: | chr7:43182329-43182579 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 70, 132 |
| Conread position: | 133-375 |
| Cow position: | chr7:13840061-13839820 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-26 |
| Alignm gaps (pig, cow): | 215, 108 |
| Conread position: | 165-362 |
| Cow position: | chr7:44616850-44616654 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 70 |
| Conread position: | 185-362 |
| Cow position: | chr7:936732-936562 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 10, 56 |
| Conread position: | 186-375 |
| Cow position: | chr7:25828722-25828536 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 35, 81 |
| Conread position: | 191-375 |
| Cow position: | chr7:5015021-5014839 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 191-375 |
| Cow position: | chr7:36905720-36905538 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 191-375 |
| Cow position: | chr7:49058742-49058924 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 91, 67 |
| Conread position: | 193-372 |
| Cow position: | chr7:32738745-32738571 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 75, 49 |
| Conread position: | 194-329 |
| Cow position: | chr7:48761414-48761279 (view UCSC Genome Browser custom track) |
| Alignm length: | 139 |
| Alignm identity: | 109 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 19, 49 |
| Conread position: | 194-373 |
| Cow position: | chr7:62015225-62015402 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 88, 74 |
| Conread position: | 194-375 |
| Cow position: | chr7:33509462-33509643 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 68, 46 |
| Conread position: | 194-375 |
| Cow position: | chr7:38811099-38811280 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 194-375 |
| Cow position: | chr7:55975129-55975304 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 131 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 194-375 |
| Cow position: | chr7:57380430-57380610 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 132 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 92, 0 |
| Conread position: | 194-377 |
| Cow position: | chr7:30544795-30544972 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 47, 0 |
| Conread position: | 215-375 |
| Cow position: | chr7:19922636-19922478 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 124 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 0 |
Show alignments to all cow chromosomes.