Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-138 |
| Cow position: | chr8:12515783-12515644 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1-143 |
| Cow position: | chr8:10097383-10097527 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 1-167 |
| Cow position: | chr8:26079620-26079788 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-171 |
| Cow position: | chr8:5650249-5650090 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 44, 23 |
| Conread position: | 1-176 |
| Cow position: | chr8:12576842-12576665 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 76, 98 |
| Conread position: | 1-177 |
| Cow position: | chr8:30549573-30549404 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 132 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 1-178 |
| Cow position: | chr8:40113662-40113842 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 141 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 1-189 |
| Cow position: | chr8:1102913-1103103 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 149 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 51, 126 |
| Conread position: | 1-189 |
| Cow position: | chr8:7419023-7419215 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 51, 69 |
| Conread position: | 1-189 |
| Cow position: | chr8:25584964-25585145 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 1-205 |
| Cow position: | chr8:33777468-33777264 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 143 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 112, 96 |
| Conread position: | 1-217 |
| Cow position: | chr8:5959364-5959154 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 179, 23 |
| Conread position: | 1-368 |
| Cow position: | chr8:61168722-61169074 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 152 |
| Conread position: | 1-369 |
| Cow position: | chr8:3552295-3551931 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 180 |
| Conread position: | 1-375 |
| Cow position: | chr8:29240726-29240362 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 256 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 76, 43 |
| Conread position: | 1-375 |
| Cow position: | chr8:39940387-39940030 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 269 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 100, 19 |
| Conread position: | 1-375 |
| Cow position: | chr8:46751336-46750970 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 124 |
| Conread position: | 3-178 |
| Cow position: | chr8:9076811-9076986 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 137 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 5, 49 |
| Conread position: | 3-375 |
| Cow position: | chr8:45966285-45965928 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 49, 75 |
| Conread position: | 4-163 |
| Cow position: | chr8:36295099-36295265 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 131 |
| Alignm E-value: | 6e-31 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 4-267 |
| Cow position: | chr8:1365562-1365829 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 184 |
| Conread position: | 4-285 |
| Cow position: | chr8:47802174-47801891 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 183 |
| Conread position: | 4-368 |
| Cow position: | chr8:23704649-23704282 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 184 |
| Conread position: | 11-178 |
| Cow position: | chr8:12524917-12524751 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 140 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 154, 20 |
| Conread position: | 28-162 |
| Cow position: | chr8:21896814-21896681 (view UCSC Genome Browser custom track) |
| Alignm length: | 135 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 28-162 |
| Cow position: | chr8:21986336-21986474 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 109 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-172 |
| Cow position: | chr8:8784384-8784237 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 115 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-174 |
| Cow position: | chr8:21977977-21978127 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 116 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr8:9701418-9701574 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 82, 45 |
| Conread position: | 28-188 |
| Cow position: | chr8:39880666-39880827 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 29-177 |
| Cow position: | chr8:58150519-58150367 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 116 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 16, 27 |
| Conread position: | 30-177 |
| Cow position: | chr8:48707664-48707513 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 112 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 50, 0 |
| Conread position: | 168-375 |
| Cow position: | chr8:58166867-58166666 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 186-348 |
| Cow position: | chr8:40113829-40113990 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 121 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 18, 64 |
| Conread position: | 186-375 |
| Cow position: | chr8:9701550-9701737 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 132 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 110, 82 |
| Conread position: | 186-375 |
| Cow position: | chr8:39880803-39880990 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 96, 73 |
| Conread position: | 186-377 |
| Cow position: | chr8:25585121-25585303 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 140 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 34, 49 |
| Conread position: | 191-373 |
| Cow position: | chr8:18951160-18951342 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 130 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 191-376 |
| Cow position: | chr8:4933467-4933281 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 136 |
| Alignm E-value: | 8e-24 |
| Alignm gaps (pig, cow): | 105, 67 |
| Conread position: | 194-375 |
| Cow position: | chr8:12515551-12515372 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 87, 47 |
| Conread position: | 194-375 |
| Cow position: | chr8:12524756-12524579 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 194-375 |
| Cow position: | chr8:36296218-36296039 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 128 |
| Alignm E-value: | 9e-25 |
| Alignm gaps (pig, cow): | 71, 0 |
| Conread position: | 195-375 |
| Cow position: | chr8:53044060-53043884 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 130 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 27, 0 |
| Conread position: | 210-365 |
| Cow position: | chr8:59234500-59234345 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 114 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 26, 95 |
| Conread position: | 214-375 |
| Cow position: | chr8:21986497-21986654 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 68, 32 |
| Conread position: | 215-375 |
| Cow position: | chr8:1103109-1103264 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 121 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 68, 26 |
| Conread position: | 215-375 |
| Cow position: | chr8:9076997-9077156 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 64, 26 |
Show alignments to all cow chromosomes.