Cow genome map
| Conread name: | End1-UMC-pd10en3-010-f05 |
| Conread position: | 1-167 |
| Cow position: | chr9:28536137-28536307 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 55, 37 |
| Conread position: | 1-177 |
| Cow position: | chr9:36712803-36712622 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 130 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 55, 139 |
| Conread position: | 1-178 |
| Cow position: | chr9:7448115-7448303 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-185 |
| Cow position: | chr9:41027039-41026848 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-189 |
| Cow position: | chr9:1383337-1383526 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 0 |
| Conread position: | 1-189 |
| Cow position: | chr9:15993363-15993169 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 104 |
| Conread position: | 1-189 |
| Cow position: | chr9:30200006-30200196 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 55, 0 |
| Conread position: | 1-189 |
| Cow position: | chr9:34047884-34047689 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 1-189 |
| Cow position: | chr9:42252751-42252555 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 55, 105 |
| Conread position: | 1-189 |
| Cow position: | chr9:58569398-58569586 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-193 |
| Cow position: | chr9:8627258-8627454 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 1-203 |
| Cow position: | chr9:37289878-37289666 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 169 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 1-360 |
| Cow position: | chr9:5479585-5479212 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 245 |
| Conread position: | 1-365 |
| Cow position: | chr9:44114558-44114904 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 73 |
| Conread position: | 1-373 |
| Cow position: | chr9:7008994-7008635 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 172 |
| Conread position: | 1-375 |
| Cow position: | chr9:1387910-1387537 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 36 |
| Conread position: | 1-375 |
| Cow position: | chr9:7616007-7615654 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 268 |
| Alignm E-value: | 7.00649e-43 |
| Alignm gaps (pig, cow): | 45, 76 |
| Conread position: | 1-375 |
| Cow position: | chr9:8321127-8321498 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 44 |
| Conread position: | 1-375 |
| Cow position: | chr9:12638302-12637939 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 93 |
| Conread position: | 1-375 |
| Cow position: | chr9:16619014-16619381 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 179 |
| Conread position: | 1-375 |
| Cow position: | chr9:27385822-27385444 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 160 |
| Conread position: | 1-375 |
| Cow position: | chr9:40440785-40441156 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 55, 23 |
| Conread position: | 1-376 |
| Cow position: | chr9:5381097-5380725 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 96 |
| Conread position: | 1-377 |
| Cow position: | chr9:16863661-16864034 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 290 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 16 |
| Conread position: | 4-237 |
| Cow position: | chr9:1631046-1631278 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 222, 18 |
| Conread position: | 5-362 |
| Cow position: | chr9:6260460-6260099 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 243 |
| Conread position: | 5-375 |
| Cow position: | chr9:25541579-25541213 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 72, 50 |
| Conread position: | 8-189 |
| Cow position: | chr9:61574512-61574329 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 137 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 48, 98 |
| Conread position: | 11-189 |
| Cow position: | chr9:3435998-3436176 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 133 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 64, 125 |
| Conread position: | 24-316 |
| Cow position: | chr9:23133432-23133718 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 32, 164 |
| Conread position: | 27-188 |
| Cow position: | chr9:4968357-4968519 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 125 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 28-178 |
| Cow position: | chr9:25032027-25032181 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 113 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 28-188 |
| Cow position: | chr9:20605395-20605556 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 28-188 |
| Cow position: | chr9:34402508-34402673 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 48-272 |
| Cow position: | chr9:48193777-48193551 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 171 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 38, 182 |
| Conread position: | 55-369 |
| Cow position: | chr9:8083147-8082844 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 229 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 25, 50 |
| Conread position: | 191-375 |
| Cow position: | chr9:17988893-17988715 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 21, 0 |
| Conread position: | 191-375 |
| Cow position: | chr9:61127847-61128029 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-23 |
| Alignm gaps (pig, cow): | 16, 25 |
| Conread position: | 194-373 |
| Cow position: | chr9:20605540-20605717 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 126 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 102, 0 |
| Conread position: | 194-375 |
| Cow position: | chr9:1383510-1383694 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 26, 48 |
| Conread position: | 194-375 |
| Cow position: | chr9:5701621-5701800 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 111, 73 |
| Conread position: | 194-375 |
| Cow position: | chr9:8627434-8627611 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 84, 13 |
| Conread position: | 194-375 |
| Cow position: | chr9:36602614-36602795 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 19, 50 |
| Conread position: | 194-376 |
| Cow position: | chr9:41026860-41026678 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 146 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 95, 17 |
| Conread position: | 195-377 |
| Cow position: | chr9:22441180-22441359 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 133 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 87, 65 |
| Conread position: | 197-375 |
| Cow position: | chr9:15993181-15993005 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 84, 14 |
| Conread position: | 214-377 |
| Cow position: | chr9:41843254-41843094 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 44, 0 |
| Conread position: | 215-369 |
| Cow position: | chr9:42252549-42252398 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 235-375 |
| Cow position: | chr9:37289361-37289224 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 106 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 12, 0 |
Show alignments to all cow chromosomes.