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Cow genome map

           
Conread name:
           
End1-UMC-pd10en3-022-e09
        

               
Conread position:
               
5-349
               

               
Cow position:
               
chr1:69678651-69678301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 76
               

               
Conread position:
               
18-349
               

               
Cow position:
               
chr1:74084500-74084162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
79, 88
               

               
Conread position:
               
20-332
               

               
Cow position:
               
chr1:100537501-100537812 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
78, 275
               

               
Conread position:
               
20-348
               

               
Cow position:
               
chr1:68827214-68826879 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
342
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
78, 165
               

               
Conread position:
               
26-270
               

               
Cow position:
               
chr1:34685892-34686129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
81, 91
               

               
Conread position:
               
27-270
               

               
Cow position:
               
chr1:95327454-95327212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
73, 34
               

               
Conread position:
               
27-349
               

               
Cow position:
               
chr1:65103335-65103647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
71, 55
               

               
Conread position:
               
35-349
               

               
Cow position:
               
chr1:57635173-57635488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
63, 142
               

               
Conread position:
               
43-269
               

               
Cow position:
               
chr1:74947405-74947185 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
23, 98
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr1:11770576-11770266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 31
               

               
Conread position:
               
45-349
               

               
Cow position:
               
chr1:61884631-61884939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 135
               

               
Conread position:
               
49-346
               

               
Cow position:
               
chr1:71818737-71818439 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
223, 30
               

               
Conread position:
               
49-347
               

               
Cow position:
               
chr1:6958599-6958897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 125
               

               
Conread position:
               
51-269
               

               
Cow position:
               
chr1:82338065-82337843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
32, 87
               

               
Conread position:
               
51-270
               

               
Cow position:
               
chr1:99609088-99609307 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
47, 134
               

               
Conread position:
               
51-347
               

               
Cow position:
               
chr1:56748314-56748625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 30
               

               
Conread position:
               
51-349
               

               
Cow position:
               
chr1:45535424-45535733 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 64
               

               
Conread position:
               
51-349
               

               
Cow position:
               
chr1:81869005-81868703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
46, 122
               

               
Conread position:
               
51-350
               

               
Cow position:
               
chr1:197280-196978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
46, 64
               

               
Conread position:
               
52-349
               

               
Cow position:
               
chr1:68818073-68817771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 54
               

               
Conread position:
               
53-333
               

               
Cow position:
               
chr1:3661332-3661054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 118
               

               
Conread position:
               
56-270
               

               
Cow position:
               
chr1:72141291-72141502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
42, 112
               

               
Conread position:
               
57-270
               

               
Cow position:
               
chr1:79278710-79278508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 29
               

               
Conread position:
               
57-347
               

               
Cow position:
               
chr1:6941194-6941484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
41, 117
               

               
Conread position:
               
58-349
               

               
Cow position:
               
chr1:83747672-83747969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
110, 41
               

               
Conread position:
               
59-268
               

               
Cow position:
               
chr1:97620110-97619900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
62-270
               

               
Cow position:
               
chr1:21787059-21787269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
63-348
               

               
Cow position:
               
chr1:19465796-19466078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
35, 116
               

               
Conread position:
               
63-348
               

               
Cow position:
               
chr1:31414223-31413947 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
36, 14
               

               
Conread position:
               
64-339
               

               
Cow position:
               
chr1:5597462-5597192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
203, 81
               

               
Conread position:
               
64-347
               

               
Cow position:
               
chr1:22826905-22827181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
34, 14
               

               
Conread position:
               
65-269
               

               
Cow position:
               
chr1:12871271-12871072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
33, 113
               

               
Conread position:
               
65-270
               

               
Cow position:
               
chr1:31348172-31347977 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
162, 106
               

               
Conread position:
               
65-270
               

               
Cow position:
               
chr1:84116138-84116337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
33, 91
               

               
Conread position:
               
65-349
               

               
Cow position:
               
chr1:37309768-37309493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
164, 44
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr1:69445110-69445303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
30, 77
               

               
Conread position:
               
67-270
               

               
Cow position:
               
chr1:97806530-97806727 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
31, 74
               

               
Conread position:
               
67-349
               

               
Cow position:
               
chr1:21835686-21835961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
31, 104
               

               
Conread position:
               
67-349
               

               
Cow position:
               
chr1:90868698-90868415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
30, 88
               

               
Conread position:
               
68-327
               

               
Cow position:
               
chr1:52496515-52496776 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
31, 115
               

               
Conread position:
               
68-349
               

               
Cow position:
               
chr1:8361-8641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
30, 127
               

               
Conread position:
               
68-349
               

               
Cow position:
               
chr1:89742273-89741974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
31, 244
               

               
Conread position:
               
68-351
               

               
Cow position:
               
chr1:57576024-57575736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
101, 25
               

               
Conread position:
               
69-256
               

               
Cow position:
               
chr1:73756833-73757013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
69-269
               

               
Cow position:
               
chr1:20422467-20422268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
28, 110
               

               
Conread position:
               
69-269
               

               
Cow position:
               
chr1:21092831-21093030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 126
               

               
Conread position:
               
69-269
               

               
Cow position:
               
chr1:52488218-52488023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
154, 28
               

               
Conread position:
               
69-270
               

               
Cow position:
               
chr1:33719854-33720058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
69-270
               

               
Cow position:
               
chr1:33811674-33811868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
28, 102
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:666100-666306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:52329788-52329588 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 12
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:53374175-53374372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:60032858-60032657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:82861513-82861722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 0
               

               
Conread position:
               
69-272
               

               
Cow position:
               
chr1:90864560-90864352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
209
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
69-273
               

               
Cow position:
               
chr1:99136690-99136489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
29, 42
               

               
Conread position:
               
69-326
               

               
Cow position:
               
chr1:79590840-79591101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
29, 218
               

               
Conread position:
               
69-333
               

               
Cow position:
               
chr1:5873231-5872971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
29, 105
               

               
Conread position:
               
69-339
               

               
Cow position:
               
chr1:52564052-52563793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 70
               

               
Conread position:
               
69-342
               

               
Cow position:
               
chr1:71946630-71946351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
29, 95
               

               
Conread position:
               
69-343
               

               
Cow position:
               
chr1:51394159-51394438 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
291
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
29, 114
               

               
Conread position:
               
69-343
               

               
Cow position:
               
chr1:81290258-81290527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
29, 85
               

               
Conread position:
               
69-346
               

               
Cow position:
               
chr1:72286309-72286045 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
69-348
               

               
Cow position:
               
chr1:53622705-53622983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
29, 52
               

               
Conread position:
               
69-348
               

               
Cow position:
               
chr1:82884645-82884368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
29, 37
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:22448844-22448555 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
201, 39
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:44155002-44155275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
29, 98
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:52039377-52039664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 109
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:68253331-68253619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
29, 120
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:69264562-69264836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
29, 97
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:73960440-73960729 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:81613125-81613415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 240
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:81913412-81913125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 170
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:85028701-85028979 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
29, 48
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:87888143-87888415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
29, 17
               

               
Conread position:
               
69-349
               

               
Cow position:
               
chr1:102647529-102647247 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
29, 107
               

               
Conread position:
               
69-351
               

               
Cow position:
               
chr1:11772341-11772057 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
29, 217
               

               
Conread position:
               
69-351
               

               
Cow position:
               
chr1:52753426-52753132 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
28, 109
               

               
Conread position:
               
69-351
               

               
Cow position:
               
chr1:78091772-78092065 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
30, 108
               

               
Conread position:
               
70-270
               

               
Cow position:
               
chr1:101822755-101822562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
152, 96
               

               
Conread position:
               
70-347
               

               
Cow position:
               
chr1:39069210-39068932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
28, 98
               

               
Conread position:
               
70-347
               

               
Cow position:
               
chr1:89342248-89341962 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
196, 27
               

               
Conread position:
               
70-349
               

               
Cow position:
               
chr1:97761369-97761626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
26, 9
               

               
Conread position:
               
70-349
               

               
Cow position:
               
chr1:98551458-98551746 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
196, 25
               

               
Conread position:
               
70-350
               

               
Cow position:
               
chr1:88652372-88652658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 107
               

               
Conread position:
               
71-270
               

               
Cow position:
               
chr1:63596318-63596115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
71-272
               

               
Cow position:
               
chr1:78809624-78809821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
8, 108
               

               
Conread position:
               
72-267
               

               
Cow position:
               
chr1:3757695-3757892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
201
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 112
               

               
Conread position:
               
72-346
               

               
Cow position:
               
chr1:41696798-41697081 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 37
               

               
Conread position:
               
72-347
               

               
Cow position:
               
chr1:37707226-37706946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 219
               

               
Conread position:
               
73-332
               

               
Cow position:
               
chr1:3456616-3456878 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
25, 81
               

               
Conread position:
               
73-347
               

               
Cow position:
               
chr1:71295564-71295272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
300
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
25, 44
               

               
Conread position:
               
73-348
               

               
Cow position:
               
chr1:57396185-57395911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
24, 108
               

               
Conread position:
               
73-349
               

               
Cow position:
               
chr1:54732713-54732459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
28, 99
               

               
Conread position:
               
74-269
               

               
Cow position:
               
chr1:64160086-64160278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
24, 93
               

               
Conread position:
               
74-351
               

               
Cow position:
               
chr1:78783291-78783576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
293
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
24, 105
               

               
Conread position:
               
75-268
               

               
Cow position:
               
chr1:46940116-46939922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
23, 100
               

               
Conread position:
               
75-268
               

               
Cow position:
               
chr1:57639774-57639585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
23, 140
               

               
Conread position:
               
75-272
               

               
Cow position:
               
chr1:56711872-56711678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
152, 22
               

               
Conread position:
               
75-332
               

               
Cow position:
               
chr1:94226802-94226545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
23, 111
               

               
Conread position:
               
75-345
               

               
Cow position:
               
chr1:22728793-22729078 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
75-345
               

               
Cow position:
               
chr1:98562906-98563184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
23, 62
               

               
Conread position:
               
75-347
               

               
Cow position:
               
chr1:1956583-1956309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:1991682-1991393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
22, 240
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:10778320-10778589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 95
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:44125891-44125609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
192, 30
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:61724279-61723993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
23, 128
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:70828660-70828929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
23, 43
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:94211980-94212248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
23, 102
               

               
Conread position:
               
75-349
               

               
Cow position:
               
chr1:100551716-100551996 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
23, 90
               

               
Conread position:
               
75-351
               

               
Cow position:
               
chr1:63391026-63390739 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
151, 103
               

               
Conread position:
               
76-269
               

               
Cow position:
               
chr1:3776867-3776674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
22, 103
               

               
Conread position:
               
77-269
               

               
Cow position:
               
chr1:14379782-14379597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
20, 68
               

               
Conread position:
               
77-269
               

               
Cow position:
               
chr1:34000653-34000850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
77-269
               

               
Cow position:
               
chr1:36613527-36613337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
22, 101
               

               
Conread position:
               
77-269
               

               
Cow position:
               
chr1:67290614-67290804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
21, 117
               

               
Conread position:
               
77-270
               

               
Cow position:
               
chr1:61392043-61391850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
20, 67
               

               
Conread position:
               
77-272
               

               
Cow position:
               
chr1:31765647-31765446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
203
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
21, 29
               

               
Conread position:
               
77-272
               

               
Cow position:
               
chr1:72035181-72034984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-40
               

               
Alignm gaps (pig, cow):
               
21, 56
               

               
Conread position:
               
77-343
               

               
Cow position:
               
chr1:8349563-8349298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
23, 101
               

               
Conread position:
               
77-347
               

               
Cow position:
               
chr1:37887040-37886782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
8, 132
               

               
Conread position:
               
77-347
               

               
Cow position:
               
chr1:82504715-82505000 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:24133307-24133034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
20, 90
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:24235770-24235493 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
212, 28
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:42874199-42873924 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 102
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:54199632-54199353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
152, 28
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:54258315-54258593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
22, 99
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:72012055-72011787 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
21, 87
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:78810784-78811064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
22, 226
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:95017765-95017503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
21, 38
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:95215438-95215164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 197
               

               
Conread position:
               
77-349
               

               
Cow position:
               
chr1:100800105-100800378 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
23, 36
               

               
Conread position:
               
78-270
               

               
Cow position:
               
chr1:90640774-90640970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
20, 0
               

               
Conread position:
               
78-349
               

               
Cow position:
               
chr1:47233726-47233452 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
20, 98
               

               
Conread position:
               
79-272
               

               
Cow position:
               
chr1:85596697-85596882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
144, 20
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr1:51531524-51531779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
19, 7
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr1:51968220-51968488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
19, 36
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr1:70538353-70538637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 232
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr1:78857572-78857303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 90
               

               
Conread position:
               
79-349
               

               
Cow position:
               
chr1:95176685-95176965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 229
               

               
Conread position:
               
81-273
               

               
Cow position:
               
chr1:874395-874592 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
18, 68
               

               
Conread position:
               
82-270
               

               
Cow position:
               
chr1:5409862-5409675 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
7, 114
               

               
Conread position:
               
82-270
               

               
Cow position:
               
chr1:19998282-19998102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
16, 95
               

               
Conread position:
               
82-351
               

               
Cow position:
               
chr1:68282547-68282819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
17, 227
               

               
Conread position:
               
83-268
               

               
Cow position:
               
chr1:32631219-32631404 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
10, 90
               

               
Conread position:
               
83-270
               

               
Cow position:
               
chr1:84239353-84239174 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
15, 106
               

               
Conread position:
               
84-267
               

               
Cow position:
               
chr1:26688723-26688539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
84-268
               

               
Cow position:
               
chr1:33716976-33717165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
84-269
               

               
Cow position:
               
chr1:102469210-102469027 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
14, 102
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr1:39418363-39418182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 84
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr1:44136707-44136527 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 116
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr1:63435048-63434867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr1:79165337-79165146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
84-270
               

               
Cow position:
               
chr1:98708197-98708379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
84-272
               

               
Cow position:
               
chr1:43352894-43352717 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
126, 57
               

               
Conread position:
               
84-272
               

               
Cow position:
               
chr1:50679531-50679342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
14, 96
               

               
Conread position:
               
84-272
               

               
Cow position:
               
chr1:89395346-89395542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
197
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
84-326
               

               
Cow position:
               
chr1:38278290-38278033 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
84-333
               

               
Cow position:
               
chr1:11914122-11913869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
84-345
               

               
Cow position:
               
chr1:99118140-99118394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 179
               

               
Conread position:
               
84-346
               

               
Cow position:
               
chr1:89485346-89485602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
40, 14
               

               
Conread position:
               
84-348
               

               
Cow position:
               
chr1:7350293-7350573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
84-348
               

               
Cow position:
               
chr1:84812182-84811914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
15, 220
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:24655715-24655984 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
14, 31
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:31934268-31934533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
14, 75
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:42887508-42887251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
14, 106
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:45289118-45288845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-39
               

               
Alignm gaps (pig, cow):
               
14, 33
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:48105679-48105405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 103
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:81563488-81563771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
13, 51
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:84255509-84255793 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
286
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
14, 251
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:89349732-89349991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
15, 63
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:92369471-92369762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
14, 242
               

               
Conread position:
               
84-349
               

               
Cow position:
               
chr1:102350003-102349720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
14, 115
               

               
Conread position:
               
84-351
               

               
Cow position:
               
chr1:57637127-57637385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
14, 94
               

               
Conread position:
               
85-268
               

               
Cow position:
               
chr1:74013511-74013322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
85-270
               

               
Cow position:
               
chr1:28176756-28176948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
13, 0
               

               
Conread position:
               
85-270
               

               
Cow position:
               
chr1:30504227-30504410 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
13, 110
               

               
Conread position:
               
85-270
               

               
Cow position:
               
chr1:101547286-101547094 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
14, 30
               

               
Conread position:
               
85-271
               

               
Cow position:
               
chr1:100450434-100450241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
198
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 98
               

               
Conread position:
               
85-272
               

               
Cow position:
               
chr1:10655233-10655425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
85-348
               

               
Cow position:
               
chr1:51445635-51445911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
13, 93
               

               
Conread position:
               
85-349
               

               
Cow position:
               
chr1:3035237-3034973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 83
               

               
Conread position:
               
85-349
               

               
Cow position:
               
chr1:64678453-64678721 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
13, 214
               

               
Conread position:
               
85-351
               

               
Cow position:
               
chr1:100400445-100400165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
13, 92
               

               
Conread position:
               
88-251
               

               
Cow position:
               
chr1:25281917-25281756 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 85
               

               
Conread position:
               
88-268
               

               
Cow position:
               
chr1:20287876-20288055 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
10, 18
               

               
Conread position:
               
88-270
               

               
Cow position:
               
chr1:93528449-93528637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
189
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
88-349
               

               
Cow position:
               
chr1:52994783-52995050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
10, 147
               

               
Conread position:
               
88-349
               

               
Cow position:
               
chr1:53308633-53308363 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4.06377e-44
               

               
Alignm gaps (pig, cow):
               
10, 84
               

               
Conread position:
               
88-351
               

               
Cow position:
               
chr1:83082761-83083036 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
10, 33
               

               
Conread position:
               
89-270
               

               
Cow position:
               
chr1:95056815-95056994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
89-272
               

               
Cow position:
               
chr1:20002476-20002299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
89-338
               

               
Cow position:
               
chr1:57900981-57900726 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
9, 89
               

               
Conread position:
               
89-338
               

               
Cow position:
               
chr1:94403976-94404229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
9, 84
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr1:44506728-44506997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 37
               

               
Conread position:
               
89-347
               

               
Cow position:
               
chr1:101634461-101634736 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
9, 82
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr1:29671764-29671495 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
11, 106
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr1:56477355-56477618 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
9, 79
               

               
Conread position:
               
89-349
               

               
Cow position:
               
chr1:71079193-71078934 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3.00004e-41
               

               
Alignm gaps (pig, cow):
               
93, 16
               

               
Conread position:
               
91-270
               

               
Cow position:
               
chr1:68951393-68951566 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
8, 77
               

               
Conread position:
               
92-267
               

               
Cow position:
               
chr1:48580893-48581067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
5, 105
               

               
Conread position:
               
92-270
               

               
Cow position:
               
chr1:54478089-54478263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
74, 0
               

               
Conread position:
               
92-270
               

               
Cow position:
               
chr1:77462128-77462299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
5, 52
               

               
Conread position:
               
93-269
               

               
Cow position:
               
chr1:26200986-26201157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
83, 0
               

               
Conread position:
               
95-270
               

               
Cow position:
               
chr1:15333649-15333823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
118, 13
               

               
Conread position:
               
96-269
               

               
Cow position:
               
chr1:40531341-40531175 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
7, 28
               

               
Conread position:
               
96-272
               

               
Cow position:
               
chr1:100512364-100512540 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
127, 93
               

               
Conread position:
               
96-318
               

               
Cow position:
               
chr1:19545331-19545109 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9.00054e-42
               

               
Alignm gaps (pig, cow):
               
190, 81
               

               
Conread position:
               
96-345
               

               
Cow position:
               
chr1:102784728-102784980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
6, 97
               

               
Conread position:
               
96-348
               

               
Cow position:
               
chr1:80899876-80900145 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
119, 208
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:18937066-18936808 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
7, 198
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:26729496-26729744 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
165, 80
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:42138635-42138884 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
131, 97
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:43389280-43389022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
5, 76
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:62964047-62964292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
7, 70
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:81569267-81569002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-37
               

               
Alignm gaps (pig, cow):
               
7, 204
               

               
Conread position:
               
96-349
               

               
Cow position:
               
chr1:91800836-91800573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
174, 12
               

               
Conread position:
               
97-327
               

               
Cow position:
               
chr1:72103612-72103854 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
17, 83
               

               
Conread position:
               
97-332
               

               
Cow position:
               
chr1:43358245-43358001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
129, 74
               

               
Conread position:
               
97-349
               

               
Cow position:
               
chr1:54207047-54206788 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
7, 19
               

               
Conread position:
               
98-272
               

               
Cow position:
               
chr1:31348670-31348499 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
129, 78
               

               
Conread position:
               
99-254
               

               
Cow position:
               
chr1:99543277-99543126 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
156
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
72, 0
               

               
Conread position:
               
99-268
               

               
Cow position:
               
chr1:7449903-7450067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
12, 79
               

               
Conread position:
               
99-270
               

               
Cow position:
               
chr1:47008802-47008970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
94, 0
               

               
Conread position:
               
99-270
               

               
Cow position:
               
chr1:49839279-49839444 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
78, 0
               

               
Conread position:
               
99-272
               

               
Cow position:
               
chr1:68619164-68618992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
8e-40
               

               
Alignm gaps (pig, cow):
               
132, 27
               

               
Conread position:
               
99-311
               

               
Cow position:
               
chr1:21934400-21934196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
136, 72
               

               
Conread position:
               
99-348
               

               
Cow position:
               
chr1:64804336-64804077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
132, 198
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:4290930-4291192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
122, 62
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:55705482-55705220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 211
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:61005794-61005536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
149, 0
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:62919948-62920194 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
83, 43
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:70434765-70435026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
99-349
               

               
Cow position:
               
chr1:98360637-98360370 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
125, 217
               

               
Conread position:
               
100-269
               

               
Cow position:
               
chr1:86325838-86325670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
148, 97
               

               
Conread position:
               
100-270
               

               
Cow position:
               
chr1:4293835-4293994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-29
               

               
Alignm gaps (pig, cow):
               
84, 0
               

               
Conread position:
               
100-270
               

               
Cow position:
               
chr1:49753705-49753867 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
100-321
               

               
Cow position:
               
chr1:7186560-7186786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
68, 196
               

               
Conread position:
               
101-347
               

               
Cow position:
               
chr1:31235158-31234907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-41
               

               
Alignm gaps (pig, cow):
               
126, 0
               

               
Conread position:
               
102-270
               

               
Cow position:
               
chr1:44164853-44165021 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
102-344
               

               
Cow position:
               
chr1:87072479-87072720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
168, 82
               

               
Conread position:
               
102-351
               

               
Cow position:
               
chr1:76222916-76222660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-34
               

               
Alignm gaps (pig, cow):
               
123, 73
               

               
Conread position:
               
103-349
               

               
Cow position:
               
chr1:96472205-96472465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
33, 183
               

               
Conread position:
               
105-270
               

               
Cow position:
               
chr1:43872553-43872392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
11, 0
               

               
Conread position:
               
105-347
               

               
Cow position:
               
chr1:40599826-40600069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
159, 62
               

               
Conread position:
               
105-348
               

               
Cow position:
               
chr1:34771726-34771478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
167, 61
               

               
Conread position:
               
106-269
               

               
Cow position:
               
chr1:26702429-26702269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
102, 83
               

               
Conread position:
               
106-270
               

               
Cow position:
               
chr1:52956038-52956192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
165
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
6e-27
               

               
Alignm gaps (pig, cow):
               
60, 0
               

               
Conread position:
               
106-332
               

               
Cow position:
               
chr1:11728956-11729184 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
178, 165
               

               
Conread position:
               
106-348
               

               
Cow position:
               
chr1:93043804-93044046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 195
               

               
Conread position:
               
106-349
               

               
Cow position:
               
chr1:98030693-98030949 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
142, 0
               

               
Conread position:
               
108-272
               

               
Cow position:
               
chr1:45673492-45673650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
114, 33
               

               
Conread position:
               
109-349
               

               
Cow position:
               
chr1:81228558-81228308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
6e-38
               

               
Alignm gaps (pig, cow):
               
116, 68
               

               
Conread position:
               
110-349
               

               
Cow position:
               
chr1:8287831-8287604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
120, 68
               

               
Conread position:
               
112-312
               

               
Cow position:
               
chr1:20544077-20544275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
173, 25
               

               
Conread position:
               
113-270
               

               
Cow position:
               
chr1:74956238-74956082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-32
               

               
Alignm gaps (pig, cow):
               
112, 69
               

               
Conread position:
               
114-270
               

               
Cow position:
               
chr1:98310847-98311007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
5e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
114-350
               

               
Cow position:
               
chr1:42175506-42175749 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
32, 220
               

               
Conread position:
               
118-270
               

               
Cow position:
               
chr1:95654925-95654775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
153
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
139, 0
               

               
Conread position:
               
118-349
               

               
Cow position:
               
chr1:62291895-62291672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
167, 48
               

               
Conread position:
               
118-349
               

               
Cow position:
               
chr1:75382782-75383007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
114, 0
               

               
Conread position:
               
120-349
               

               
Cow position:
               
chr1:12464871-12464638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
151, 57
               

               
Conread position:
               
120-351
               

               
Cow position:
               
chr1:62036593-62036830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
91, 128
               

               
Conread position:
               
122-332
               

               
Cow position:
               
chr1:32013751-32013963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
105, 66
               

               
Conread position:
               
122-349
               

               
Cow position:
               
chr1:4414413-4414180 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
150, 48
               

               
Conread position:
               
125-262
               

               
Cow position:
               
chr1:99570667-99570534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
97, 31
               

               
Conread position:
               
125-270
               

               
Cow position:
               
chr1:46030555-46030417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
147
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
102, 49
               

               
Conread position:
               
125-329
               

               
Cow position:
               
chr1:28563771-28563560 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
8e-30
               

               
Alignm gaps (pig, cow):
               
104, 52
               

               
Conread position:
               
125-351
               

               
Cow position:
               
chr1:63138636-63138869 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
101, 57
               

               
Conread position:
               
126-270
               

               
Cow position:
               
chr1:43340824-43340673 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
152
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
95, 0
               

               
Conread position:
               
128-270
               

               
Cow position:
               
chr1:24542781-24542643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
110
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
43, 0
               

               
Conread position:
               
128-272
               

               
Cow position:
               
chr1:81470929-81471073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
145
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
129-270
               

               
Cow position:
               
chr1:51654212-51654350 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
6e-28
               

               
Alignm gaps (pig, cow):
               
92, 47
               

               
Conread position:
               
132-349
               

               
Cow position:
               
chr1:6788485-6788257 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-33
               

               
Alignm gaps (pig, cow):
               
140, 0
               

               
Conread position:
               
132-349
               

               
Cow position:
               
chr1:89497770-89497982 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
135, 44
               

               
Conread position:
               
133-328
               

               
Cow position:
               
chr1:82443651-82443449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
88, 43
               

               
Conread position:
               
135-269
               

               
Cow position:
               
chr1:102113301-102113167 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
135
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
135-346
               

               
Cow position:
               
chr1:83594000-83593785 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
95, 28
               

               
Conread position:
               
135-349
               

               
Cow position:
               
chr1:83072251-83072467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
123, 35
               

               
Conread position:
               
137-272
               

               
Cow position:
               
chr1:42398387-42398253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
139
               

               
Alignm identity:
               
109
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
89, 39
               

               
Conread position:
               
140-349
               

               
Cow position:
               
chr1:89388143-89388366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
6, 167
               

               
Conread position:
               
142-270
               

               
Cow position:
               
chr1:33207060-33206932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
129
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
142-328
               

               
Cow position:
               
chr1:89082922-89083110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
142, 40
               

               
Conread position:
               
142-333
               

               
Cow position:
               
chr1:63530395-63530568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
85, 29
               

               
Conread position:
               
142-348
               

               
Cow position:
               
chr1:24413254-24413476 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
102, 166
               

               
Conread position:
               
142-348
               

               
Cow position:
               
chr1:70028393-70028605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
143, 132
               

               
Conread position:
               
145-270
               

               
Cow position:
               
chr1:86578766-86578889 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
126
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
145-347
               

               
Cow position:
               
chr1:99039535-99039331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
9e-31
               

               
Alignm gaps (pig, cow):
               
118, 32
               

               
Conread position:
               
145-349
               

               
Cow position:
               
chr1:24445811-24445601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
215
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
140, 23
               

               
Conread position:
               
147-349
               

               
Cow position:
               
chr1:68763862-68763658 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
125, 29
               

               
Conread position:
               
148-270
               

               
Cow position:
               
chr1:20667921-20667803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
123
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 0
               

               
Conread position:
               
148-349
               

               
Cow position:
               
chr1:60281187-60281399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
4e-23
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
149-273
               

               
Cow position:
               
chr1:75933094-75933214 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
125
               

               
Alignm identity:
               
99
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
34, 0
               

               
Conread position:
               
149-349
               

               
Cow position:
               
chr1:91875090-91874886 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-31
               

               
Alignm gaps (pig, cow):
               
6, 40
               

               
Conread position:
               
150-272
               

               
Cow position:
               
chr1:57420907-57420786 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
97
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
77, 13
               

               
Conread position:
               
157-349
               

               
Cow position:
               
chr1:12978506-12978708 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
115, 139
               

               
Conread position:
               
159-332
               

               
Cow position:
               
chr1:55429128-55428948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
9e-21
               

               
Alignm gaps (pig, cow):
               
79, 138
               

               
Conread position:
               
163-349
               

               
Cow position:
               
chr1:75141834-75142023 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
195
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
58, 136
               

               
Conread position:
               
165-347
               

               
Cow position:
               
chr1:43703242-43703433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
106, 9
               

               
Conread position:
               
166-349
               

               
Cow position:
               
chr1:86110897-86110711 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-36
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
167-347
               

               
Cow position:
               
chr1:89508392-89508573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-25
               

               
Alignm gaps (pig, cow):
               
117, 0
               

               
Conread position:
               
169-349
               

               
Cow position:
               
chr1:85647944-85647754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
194
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
99, 135
               

               
Conread position:
               
177-349
               

               
Cow position:
               
chr1:93554689-93554862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
50, 111
               

               
Conread position:
               
184-349
               

               
Cow position:
               
chr1:87197680-87197846 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
168
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
83, 102
               

               
Conread position:
               
188-349
               

               
Cow position:
               
chr1:78838656-78838822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
78, 10
               

               
Conread position:
               
188-349
               

               
Cow position:
               
chr1:87440325-87440494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
3e-30
               

               
Alignm gaps (pig, cow):
               
78, 119
               

               
Conread position:
               
194-343
               

               
Cow position:
               
chr1:30047731-30047577 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
155
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
108, 0
               

               
Conread position:
               
194-349
               

               
Cow position:
               
chr1:40069105-40069262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
164
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
34, 11
               

               
Conread position:
               
196-349
               

               
Cow position:
               
chr1:8129102-8128942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
52, 107
               

               
Conread position:
               
212-349
               

               
Cow position:
               
chr1:261598-261453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
146
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
46, 0
               
Show alignments to all cow chromosomes.