Cow genome map

Conread name: End1-UMC-pd10en3-022-e09

Conread position: 4-270
Cow position: chr26:22622675-22622936 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 177
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 234, 16

Conread position: 49-349
Cow position: chr26:6793873-6794182 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 222
Alignm E-value: 7e-39
Alignm gaps (pig, cow): 49, 28

Conread position: 51-270
Cow position: chr26:613943-613729 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 170
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 32, 122

Conread position: 51-270
Cow position: chr26:9104549-9104330 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 159
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 48, 113

Conread position: 51-312
Cow position: chr26:2770102-2769849 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 171
Alignm E-value: 1e-20
Alignm gaps (pig, cow): 254, 28

Conread position: 53-350
Cow position: chr26:25442156-25441859 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 45, 132

Conread position: 58-349
Cow position: chr26:16783561-16783861 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 221
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 41, 87

Conread position: 64-349
Cow position: chr26:9867369-9867091 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 34, 114

Conread position: 66-270
Cow position: chr26:20846368-20846576 (view UCSC Genome Browser custom track)
Alignm length: 209
Alignm identity: 160
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 15, 0

Conread position: 67-327
Cow position: chr26:6188044-6188298 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 183
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 31, 111

Conread position: 68-269
Cow position: chr26:27063921-27063721 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 150
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 30, 42

Conread position: 69-269
Cow position: chr26:32682864-32683067 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 149
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 119

Conread position: 69-270
Cow position: chr26:33567291-33567096 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 157
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 160, 107

Conread position: 69-342
Cow position: chr26:14958263-14957989 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 202
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 158, 17

Conread position: 69-342
Cow position: chr26:33044831-33045111 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 29, 111

Conread position: 69-346
Cow position: chr26:27491752-27491464 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 12

Conread position: 69-347
Cow position: chr26:2345891-2345612 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 204
Alignm E-value: 7e-28
Alignm gaps (pig, cow): 5, 18

Conread position: 69-348
Cow position: chr26:34847493-34847780 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 199
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 29, 108

Conread position: 69-349
Cow position: chr26:4585460-4585173 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 202
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 29, 107

Conread position: 69-349
Cow position: chr26:9491678-9491962 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 78

Conread position: 69-349
Cow position: chr26:13021399-13021108 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 237

Conread position: 69-351
Cow position: chr26:7642827-7642534 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 207
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 29, 109

Conread position: 69-351
Cow position: chr26:13270928-13270649 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 212

Conread position: 69-351
Cow position: chr26:16167163-16166876 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 28, 110

Conread position: 75-270
Cow position: chr26:34314433-34314639 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 154
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 23, 0

Conread position: 75-272
Cow position: chr26:3182193-3181994 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 150
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 23, 0

Conread position: 75-348
Cow position: chr26:6714527-6714262 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 198
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 23, 103

Conread position: 75-351
Cow position: chr26:20256602-20256870 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 200
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 23, 79

Conread position: 76-329
Cow position: chr26:5246731-5246469 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 188
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 24, 202

Conread position: 77-268
Cow position: chr26:11263395-11263589 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 157
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 22, 0

Conread position: 77-270
Cow position: chr26:7961395-7961581 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 146
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 98

Conread position: 77-270
Cow position: chr26:16549738-16549934 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 151
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 20, 0

Conread position: 77-272
Cow position: chr26:818706-818514 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 143
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 22, 118

Conread position: 77-348
Cow position: chr26:25737229-25737507 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 198
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 21, 101

Conread position: 77-349
Cow position: chr26:8700292-8700010 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 201
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 21, 165

Conread position: 77-349
Cow position: chr26:32955866-32955596 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 194
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 21, 101

Conread position: 77-349
Cow position: chr26:33202300-33202033 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 208
Alignm E-value: 0
Alignm gaps (pig, cow): 22, 190

Conread position: 77-351
Cow position: chr26:31701573-31701851 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 20, 202

Conread position: 79-351
Cow position: chr26:30034645-30034379 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 193
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 19, 89

Conread position: 82-349
Cow position: chr26:11370697-11370949 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 197
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 16, 91

Conread position: 82-349
Cow position: chr26:28760323-28760054 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 197
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 15, 43

Conread position: 84-265
Cow position: chr26:2531410-2531236 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 13, 42

Conread position: 84-271
Cow position: chr26:21912553-21912741 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 139
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 14, 41

Conread position: 84-311
Cow position: chr26:6447842-6447611 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 179
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 194

Conread position: 84-326
Cow position: chr26:30806747-30806501 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 179
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 14, 195

Conread position: 84-341
Cow position: chr26:12238278-12237999 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 201
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 14, 234

Conread position: 84-349
Cow position: chr26:6475662-6475390 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 91

Conread position: 84-349
Cow position: chr26:10768135-10767875 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 197
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 14, 62

Conread position: 84-349
Cow position: chr26:26466953-26466691 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 190
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 14, 41

Conread position: 84-349
Cow position: chr26:35704150-35704425 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 14, 220

Conread position: 84-351
Cow position: chr26:8810897-8811166 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 198
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 14, 80

Conread position: 85-349
Cow position: chr26:31779240-31779519 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 14, 123

Conread position: 88-351
Cow position: chr26:1587373-1587624 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 187
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 10, 22

Conread position: 89-338
Cow position: chr26:24280599-24280850 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 193
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 9, 89

Conread position: 89-349
Cow position: chr26:20291912-20291655 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 8, 79

Conread position: 89-349
Cow position: chr26:25393800-25394070 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 70

Conread position: 91-272
Cow position: chr26:23001272-23001087 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 11, 0

Conread position: 96-270
Cow position: chr26:21351466-21351638 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 61, 0

Conread position: 96-272
Cow position: chr26:19774525-19774350 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 144
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 130, 98

Conread position: 96-347
Cow position: chr26:17204360-17204109 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 176
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 172, 57

Conread position: 96-349
Cow position: chr26:15200738-15200476 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 196
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 125, 67

Conread position: 98-269
Cow position: chr26:9850312-9850151 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 134
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 125, 50

Conread position: 98-272
Cow position: chr26:33096785-33096608 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 127
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 126, 0

Conread position: 98-349
Cow position: chr26:21637256-21637000 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 85

Conread position: 99-273
Cow position: chr26:32553463-32553632 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 130
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 123, 77

Conread position: 99-348
Cow position: chr26:31605189-31605442 (view UCSC Genome Browser custom track)
Alignm length: 263
Alignm identity: 187
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 167, 74

Conread position: 99-349
Cow position: chr26:27046-26798 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 173
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 127, 78

Conread position: 99-349
Cow position: chr26:32013413-32013670 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 194
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 114, 67

Conread position: 99-349
Cow position: chr26:32898089-32897832 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 171, 77

Conread position: 102-270
Cow position: chr26:8186435-8186601 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 130
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 125, 92

Conread position: 107-349
Cow position: chr26:9604351-9604599 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 178
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 167, 64

Conread position: 109-269
Cow position: chr26:25526038-25526195 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 128
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 85, 0

Conread position: 109-349
Cow position: chr26:34108555-34108796 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 175
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 13, 85

Conread position: 113-349
Cow position: chr26:25407010-25407257 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 175
Alignm E-value: 8e-30
Alignm gaps (pig, cow): 70, 165

Conread position: 118-270
Cow position: chr26:20013280-20013427 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 112
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 59, 0

Conread position: 125-349
Cow position: chr26:17148508-17148743 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 142, 185

Conread position: 129-269
Cow position: chr26:6252659-6252800 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 51, 45

Conread position: 142-271
Cow position: chr26:35448888-35449010 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 103
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 26, 0

Conread position: 142-272
Cow position: chr26:30568831-30568706 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 21, 0

Conread position: 142-329
Cow position: chr26:27761824-27761639 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 134
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 85, 35

Conread position: 142-349
Cow position: chr26:23315591-23315810 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 170
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 129, 162

Conread position: 155-348
Cow position: chr26:11270084-11270271 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 135
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 10, 0

Conread position: 161-348
Cow position: chr26:22892605-22892409 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 153
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 6, 141

Conread position: 177-349
Cow position: chr26:7155832-7156008 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 131
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 89, 115

Conread position: 177-349
Cow position: chr26:20769711-20769888 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 80, 124

Conread position: 179-346
Cow position: chr26:31572110-31572280 (view UCSC Genome Browser custom track)
Alignm length: 177
Alignm identity: 134
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 84, 115

Conread position: 198-348
Cow position: chr26:10747749-10747594 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 130
Alignm E-value: 9e-31
Alignm gaps (pig, cow): 74, 108

Show alignments to all cow chromosomes.