Cow genome map

Conread name: End1-UMC-pd3end2-002-d02

Conread position: 15-308
Cow position: chr1:22253661-22253366 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 212
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 166, 38

Conread position: 17-183
Cow position: chr1:85163726-85163895 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 124
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 52, 35

Conread position: 17-308
Cow position: chr1:68846135-68846418 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 70, 35

Conread position: 22-253
Cow position: chr1:54390546-54390779 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 163
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 6, 36

Conread position: 22-308
Cow position: chr1:57396736-57397022 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 20, 89

Conread position: 22-308
Cow position: chr1:91889822-91890099 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 118, 30

Conread position: 23-226
Cow position: chr1:81362861-81362653 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 150
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 46, 30

Conread position: 23-253
Cow position: chr1:61746597-61746837 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 171
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 58, 21

Conread position: 23-297
Cow position: chr1:20001424-20001690 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 199
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 158, 29

Conread position: 23-307
Cow position: chr1:51967826-51967542 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 6, 30

Conread position: 23-307
Cow position: chr1:68950983-68950700 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 214
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 56, 29

Conread position: 23-307
Cow position: chr1:76617891-76618181 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 46, 233

Conread position: 23-308
Cow position: chr1:13718254-13718545 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 7, 31

Conread position: 23-308
Cow position: chr1:17938169-17938462 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 203
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 46, 29

Conread position: 23-308
Cow position: chr1:30495136-30494856 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 200
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 150, 8

Conread position: 23-308
Cow position: chr1:37323698-37323981 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 46, 30

Conread position: 23-308
Cow position: chr1:51980555-51980277 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 77, 29

Conread position: 23-308
Cow position: chr1:73761962-73762253 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 29

Conread position: 24-259
Cow position: chr1:58340498-58340253 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 166
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 10, 0

Conread position: 24-308
Cow position: chr1:30079524-30079233 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 50, 258

Conread position: 24-308
Cow position: chr1:89492654-89492938 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 45, 26

Conread position: 25-301
Cow position: chr1:29915748-29915473 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 199
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 71, 27

Conread position: 25-308
Cow position: chr1:28677627-28677348 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 208
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 59, 25

Conread position: 26-200
Cow position: chr1:28413256-28413431 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 57, 26

Conread position: 26-202
Cow position: chr1:34685075-34684901 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 150, 8

Conread position: 26-215
Cow position: chr1:44836936-44837135 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 141
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 26

Conread position: 26-223
Cow position: chr1:12465447-12465639 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 144
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 147, 27

Conread position: 26-236
Cow position: chr1:81356713-81356928 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 149
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 43, 26

Conread position: 26-245
Cow position: chr1:31238603-31238835 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 165
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 26

Conread position: 26-245
Cow position: chr1:45006525-45006312 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 162
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 114, 26

Conread position: 26-245
Cow position: chr1:82163216-82163444 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 26

Conread position: 26-254
Cow position: chr1:73433917-73434160 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 168
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 45, 24

Conread position: 26-255
Cow position: chr1:57946513-57946273 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 170
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 42, 0

Conread position: 26-255
Cow position: chr1:71081267-71081501 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 177
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 155, 26

Conread position: 26-256
Cow position: chr1:88338023-88337786 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 167
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 43, 26

Conread position: 26-258
Cow position: chr1:52508042-52508280 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 177
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 26

Conread position: 26-258
Cow position: chr1:87830825-87830590 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 115, 31

Conread position: 26-267
Cow position: chr1:53371949-53371699 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 176
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 61, 31

Conread position: 26-272
Cow position: chr1:3440543-3440289 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 24

Conread position: 26-272
Cow position: chr1:18024239-18024494 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 173
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 13, 0

Conread position: 26-272
Cow position: chr1:23117627-23117882 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 178
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 26

Conread position: 26-272
Cow position: chr1:70380832-70381086 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 188
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 48, 26

Conread position: 26-272
Cow position: chr1:72114717-72114467 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 181
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 61, 26

Conread position: 26-272
Cow position: chr1:76748816-76749066 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 179
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 155, 54

Conread position: 26-278
Cow position: chr1:60280110-60279856 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 189
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 44, 26

Conread position: 26-291
Cow position: chr1:98559494-98559222 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 204
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 43, 26

Conread position: 26-296
Cow position: chr1:6765521-6765793 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 196
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 59, 26

Conread position: 26-296
Cow position: chr1:97075920-97076197 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 61, 24

Conread position: 26-304
Cow position: chr1:100591192-100591476 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 257

Conread position: 26-305
Cow position: chr1:70864824-70864547 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 116, 26

Conread position: 26-305
Cow position: chr1:95765804-95766085 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 43, 9

Conread position: 26-306
Cow position: chr1:19440963-19441246 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 114, 26

Conread position: 26-306
Cow position: chr1:36645875-36646157 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 196
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 74

Conread position: 26-306
Cow position: chr1:53650230-53649946 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 27

Conread position: 26-306
Cow position: chr1:56746465-56746178 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 210
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 44, 26

Conread position: 26-306
Cow position: chr1:57571413-57571126 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 43, 26

Conread position: 26-306
Cow position: chr1:69406739-69406452 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 46, 26

Conread position: 26-307
Cow position: chr1:3382738-3383026 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 257

Conread position: 26-307
Cow position: chr1:21113843-21114130 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 26

Conread position: 26-307
Cow position: chr1:90913410-90913122 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:3340253-3339958 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 215
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr1:3930759-3931048 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:5162764-5163049 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:5505519-5505231 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:6196699-6196986 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 43, 112

Conread position: 26-308
Cow position: chr1:8602395-8602684 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:10005411-10005696 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 206
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 31

Conread position: 26-308
Cow position: chr1:14240486-14240775 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:16116819-16117107 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 42, 26

Conread position: 26-308
Cow position: chr1:16973542-16973820 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 204
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 146, 26

Conread position: 26-308
Cow position: chr1:18196176-18195887 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:19145580-19145877 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 220
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 24

Conread position: 26-308
Cow position: chr1:21376979-21377266 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 43, 16

Conread position: 26-308
Cow position: chr1:22012382-22012669 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:24580977-24580698 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 73, 16

Conread position: 26-308
Cow position: chr1:24595165-24594898 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 202
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr1:25553384-25553096 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 204
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:26446728-26446446 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 209
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:26811494-26811782 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 42, 26

Conread position: 26-308
Cow position: chr1:28176329-28176048 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 205
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 114, 27

Conread position: 26-308
Cow position: chr1:28876678-28876389 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:29038121-29037832 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 43, 24

Conread position: 26-308
Cow position: chr1:29461907-29461620 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 211
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr1:30531453-30531731 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 196
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 155, 46

Conread position: 26-308
Cow position: chr1:32562958-32563243 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 55

Conread position: 26-308
Cow position: chr1:38545136-38545424 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 257

Conread position: 26-308
Cow position: chr1:42554578-42554297 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 211
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 148, 26

Conread position: 26-308
Cow position: chr1:42740277-42739988 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr1:42875079-42875364 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 26

Conread position: 26-308
Cow position: chr1:44127272-44127549 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:47454400-47454688 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 61, 257

Conread position: 26-308
Cow position: chr1:52355092-52355380 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 256

Conread position: 26-308
Cow position: chr1:52371553-52371264 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:52754953-52755240 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 194
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 42, 207

Conread position: 26-308
Cow position: chr1:53309082-53309367 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 204
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 48, 27

Conread position: 26-308
Cow position: chr1:53578636-53578348 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:55043683-55043970 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 193
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 43, 190

Conread position: 26-308
Cow position: chr1:55158801-55159091 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 203
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 43, 104

Conread position: 26-308
Cow position: chr1:55327664-55327945 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 201
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:55780449-55780163 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 206
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 43, 254

Conread position: 26-308
Cow position: chr1:56190838-56191126 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr1:56425493-56425205 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 34, 259

Conread position: 26-308
Cow position: chr1:56475576-56475292 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 26

Conread position: 26-308
Cow position: chr1:56631951-56631672 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 150, 26

Conread position: 26-308
Cow position: chr1:57362752-57363041 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:57678802-57679086 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 198
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:58439717-58440007 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 209
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 61, 44

Conread position: 26-308
Cow position: chr1:61221011-61220724 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 202
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 43, 9

Conread position: 26-308
Cow position: chr1:61283000-61282714 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 43, 32

Conread position: 26-308
Cow position: chr1:61747872-61748158 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 208
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 43, 31

Conread position: 26-308
Cow position: chr1:63602207-63602496 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:64941968-64942244 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:65390138-65389849 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:66491158-66490873 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 197
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:67078246-67078534 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:68812352-68812626 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 203
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 111, 31

Conread position: 26-308
Cow position: chr1:72139775-72139484 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 44, 27

Conread position: 26-308
Cow position: chr1:72987036-72986750 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 199
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 116, 101

Conread position: 26-308
Cow position: chr1:76873458-76873174 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 196
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 61, 104

Conread position: 26-308
Cow position: chr1:78291138-78290850 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 200
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 61, 26

Conread position: 26-308
Cow position: chr1:79334406-79334695 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 205
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:79453179-79453468 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 48, 257

Conread position: 26-308
Cow position: chr1:82920560-82920847 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 26, 220

Conread position: 26-308
Cow position: chr1:85142634-85142932 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 214
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 13, 27

Conread position: 26-308
Cow position: chr1:85338430-85338163 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 204
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 148, 20

Conread position: 26-308
Cow position: chr1:85773786-85773498 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:86599430-86599723 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 206
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:88179441-88179150 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 198
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr1:89112396-89112115 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 116, 26

Conread position: 26-308
Cow position: chr1:89185887-89186166 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 58, 26

Conread position: 26-308
Cow position: chr1:89484672-89484389 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr1:90393176-90393465 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 44, 22

Conread position: 26-308
Cow position: chr1:95474329-95474610 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 205
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr1:99117595-99117307 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 208
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 44, 27

Conread position: 26-308
Cow position: chr1:99837770-99838059 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 44, 257

Conread position: 26-308
Cow position: chr1:100887927-100888216 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 42, 257

Conread position: 26-308
Cow position: chr1:102431162-102431447 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 204
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 114, 26

Conread position: 26-308
Cow position: chr1:102784108-102783829 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 43, 26

Conread position: 27-275
Cow position: chr1:92279245-92279488 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 184
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 154, 25

Conread position: 27-307
Cow position: chr1:12468218-12468500 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 203
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 154, 23

Conread position: 27-308
Cow position: chr1:33547821-33548109 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 197
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 42, 258

Conread position: 27-308
Cow position: chr1:38712292-38712004 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 198
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 42, 256

Conread position: 27-308
Cow position: chr1:68602050-68602338 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 34, 250

Conread position: 27-308
Cow position: chr1:89766952-89767236 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 194
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 43, 13

Conread position: 27-308
Cow position: chr1:92196553-92196269 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 25

Conread position: 28-194
Cow position: chr1:44229793-44229626 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 124
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 41, 6

Conread position: 28-241
Cow position: chr1:4375224-4375437 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 59, 24

Conread position: 28-277
Cow position: chr1:68854530-68854276 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 24

Conread position: 28-296
Cow position: chr1:18136863-18137129 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 184
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 41, 24

Conread position: 28-303
Cow position: chr1:58419249-58418969 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 34, 24

Conread position: 28-304
Cow position: chr1:24562174-24562452 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 62, 24

Conread position: 28-305
Cow position: chr1:21507513-21507793 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 153, 24

Conread position: 28-306
Cow position: chr1:53397254-53396998 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 212
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 24, 0

Conread position: 28-307
Cow position: chr1:13579199-13579484 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 216
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 41, 22

Conread position: 28-307
Cow position: chr1:79632977-79633259 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 41, 24

Conread position: 28-308
Cow position: chr1:13250966-13251253 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 41, 24

Conread position: 28-308
Cow position: chr1:44078845-44079126 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 210
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 63, 7

Conread position: 28-308
Cow position: chr1:57574008-57574294 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 59, 24

Conread position: 28-308
Cow position: chr1:61342131-61342414 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 200
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 153, 24

Conread position: 29-245
Cow position: chr1:55203330-55203557 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 158
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 53, 28

Conread position: 30-290
Cow position: chr1:9438719-9438981 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 197
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 57, 22

Conread position: 30-308
Cow position: chr1:33392594-33392310 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 74

Conread position: 30-308
Cow position: chr1:53520229-53519954 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 129, 14

Conread position: 31-261
Cow position: chr1:31515547-31515778 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 175
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 149, 21

Conread position: 33-308
Cow position: chr1:73063764-73064046 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 36, 250

Conread position: 34-288
Cow position: chr1:20798397-20798131 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 35, 18

Conread position: 37-308
Cow position: chr1:72087169-72086891 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 191
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 24, 246

Conread position: 38-308
Cow position: chr1:6240716-6240983 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 189
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 102, 31

Conread position: 38-308
Cow position: chr1:46839344-46839079 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 185
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 102, 31

Conread position: 44-308
Cow position: chr1:19483684-19483951 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 202
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 25, 8

Conread position: 44-308
Cow position: chr1:52379856-52379585 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 190
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 25, 8

Conread position: 53-308
Cow position: chr1:4452531-4452795 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 190
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 70, 85

Conread position: 56-293
Cow position: chr1:11018999-11018759 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 13, 104

Conread position: 61-308
Cow position: chr1:22727845-22727584 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 189
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 120, 0

Conread position: 61-308
Cow position: chr1:51444786-51444535 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 190
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 111, 24

Conread position: 63-308
Cow position: chr1:39479949-39480194 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 175
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 117, 194

Conread position: 65-253
Cow position: chr1:72103638-72103454 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 133
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 17, 104

Conread position: 65-308
Cow position: chr1:71135439-71135194 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 177
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 23, 47

Conread position: 72-237
Cow position: chr1:76700213-76700383 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 120
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 109, 0

Conread position: 86-245
Cow position: chr1:78796556-78796720 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 128
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 57, 27

Conread position: 86-252
Cow position: chr1:41736356-41736528 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 133
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 54, 39

Conread position: 86-258
Cow position: chr1:102552522-102552343 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 132
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 60, 50

Conread position: 86-308
Cow position: chr1:43567989-43568218 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 167
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 26, 154

Conread position: 87-246
Cow position: chr1:58196936-58197102 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 128
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 94, 0

Conread position: 87-260
Cow position: chr1:50764665-50764484 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 133
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 85, 0

Conread position: 87-308
Cow position: chr1:70534946-70535171 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 165
Alignm E-value: 8e-32
Alignm gaps (pig, cow): 86, 155

Conread position: 87-308
Cow position: chr1:99581938-99582167 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 94, 197

Conread position: 88-276
Cow position: chr1:38401137-38400944 (view UCSC Genome Browser custom track)
Alignm length: 196
Alignm identity: 143
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 116

Conread position: 90-308
Cow position: chr1:11199116-11199338 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 152
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 91, 153

Conread position: 90-308
Cow position: chr1:55145560-55145337 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 88, 193

Conread position: 90-308
Cow position: chr1:66971646-66971867 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 91, 21

Conread position: 90-308
Cow position: chr1:72864460-72864242 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 170
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 91, 164

Conread position: 91-308
Cow position: chr1:73870368-73870144 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 160
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 90, 0

Conread position: 91-308
Cow position: chr1:82369930-82369710 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 172
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 76, 143

Conread position: 92-308
Cow position: chr1:16573412-16573625 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 156
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 88, 123

Conread position: 96-262
Cow position: chr1:53424428-53424264 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 127
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 85, 19

Conread position: 96-304
Cow position: chr1:22529302-22529516 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 156
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 46, 40

Conread position: 96-307
Cow position: chr1:51982959-51982737 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 159
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 22, 194

Conread position: 99-308
Cow position: chr1:79590357-79590143 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 157
Alignm E-value: 8e-31
Alignm gaps (pig, cow): 75, 183

Conread position: 100-308
Cow position: chr1:101787436-101787648 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 150
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 61, 19

Conread position: 104-307
Cow position: chr1:42887993-42888189 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 77, 117

Conread position: 108-303
Cow position: chr1:52510621-52510819 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 149
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 73, 173

Conread position: 113-272
Cow position: chr1:24202654-24202821 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 68, 0

Conread position: 123-308
Cow position: chr1:49132691-49132881 (view UCSC Genome Browser custom track)
Alignm length: 193
Alignm identity: 141
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 58, 175

Conread position: 180-308
Cow position: chr1:21785899-21785772 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 102
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 64, 94

Show alignments to all cow chromosomes.