Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 22-230 |
| Cow position: | chr12:38774620-38774406 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 51, 30 |
| Conread position: | 23-308 |
| Cow position: | chr12:24028953-24029243 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 46, 259 |
| Conread position: | 25-213 |
| Cow position: | chr12:44766360-44766162 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 49, 27 |
| Conread position: | 26-222 |
| Cow position: | chr12:21202357-21202150 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-227 |
| Cow position: | chr12:5800307-5800097 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 26-227 |
| Cow position: | chr12:5905058-5904849 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-227 |
| Cow position: | chr12:22286407-22286617 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-239 |
| Cow position: | chr12:17969491-17969275 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 44, 58 |
| Conread position: | 26-248 |
| Cow position: | chr12:31533316-31533545 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-269 |
| Cow position: | chr12:15821246-15820997 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 26-272 |
| Cow position: | chr12:23475277-23475025 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 183 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 77 |
| Conread position: | 26-303 |
| Cow position: | chr12:24206057-24205776 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-307 |
| Cow position: | chr12:12177708-12177997 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-307 |
| Cow position: | chr12:22202154-22202442 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:1093428-1093139 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:3716746-3717035 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr12:5226757-5226472 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:5713488-5713202 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:6186621-6186908 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 234 |
| Conread position: | 26-308 |
| Cow position: | chr12:9988173-9988447 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 114, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:11101775-11101486 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:12754639-12754918 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:19198547-19198274 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 142, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:20459195-20459481 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 219 |
| Conread position: | 26-308 |
| Cow position: | chr12:27506122-27506411 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr12:31328802-31329091 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr12:32657076-32656787 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr12:41337705-41337994 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 27-272 |
| Cow position: | chr12:32088761-32088511 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 167 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 62, 23 |
| Conread position: | 27-308 |
| Cow position: | chr12:25096742-25097027 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 28-308 |
| Cow position: | chr12:7885348-7885649 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 111, 24 |
| Conread position: | 36-308 |
| Cow position: | chr12:31217694-31217424 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 51, 21 |
| Conread position: | 50-293 |
| Cow position: | chr12:21484905-21484654 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 168 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 19, 208 |
| Conread position: | 51-255 |
| Cow position: | chr12:21946491-21946280 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 148 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 160 |
| Conread position: | 80-308 |
| Cow position: | chr12:36213748-36213516 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 163 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 93, 20 |
| Conread position: | 88-269 |
| Cow position: | chr12:19972205-19972025 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 131 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 52, 39 |
| Conread position: | 88-274 |
| Cow position: | chr12:15760504-15760311 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 93, 0 |
| Conread position: | 91-308 |
| Cow position: | chr12:3094162-3094385 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 175 |
| Alignm E-value: | 5.04467e-44 |
| Alignm gaps (pig, cow): | 90, 193 |
| Conread position: | 96-255 |
| Cow position: | chr12:10490303-10490139 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 125 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 67, 0 |
| Conread position: | 100-255 |
| Cow position: | chr12:19862138-19861989 (view UCSC Genome Browser custom track) |
| Alignm length: | 156 |
| Alignm identity: | 115 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 76, 0 |
| Conread position: | 111-307 |
| Cow position: | chr12:2242550-2242748 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 168 |
Show alignments to all cow chromosomes.