Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 17-258 |
| Cow position: | chr13:2800212-2799962 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 176 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 17-308 |
| Cow position: | chr13:1461205-1461502 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 52, 35 |
| Conread position: | 17-308 |
| Cow position: | chr13:22906940-22907237 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 35 |
| Conread position: | 23-247 |
| Cow position: | chr13:15459015-15458790 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 167 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 140, 30 |
| Conread position: | 23-276 |
| Cow position: | chr13:24059649-24059388 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 46, 28 |
| Conread position: | 23-308 |
| Cow position: | chr13:2804960-2805252 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 46, 30 |
| Conread position: | 23-308 |
| Cow position: | chr13:13903177-13902886 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 47, 27 |
| Conread position: | 23-308 |
| Cow position: | chr13:19843786-19843500 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 29, 52 |
| Conread position: | 23-308 |
| Cow position: | chr13:32794022-32794313 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-308 |
| Cow position: | chr13:39911720-39911435 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 46, 27 |
| Conread position: | 24-308 |
| Cow position: | chr13:34345624-34345332 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 24-308 |
| Cow position: | chr13:48627866-48627581 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 25-241 |
| Cow position: | chr13:47007068-47006848 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 25-308 |
| Cow position: | chr13:28700140-28699850 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 37, 25 |
| Conread position: | 25-308 |
| Cow position: | chr13:34190566-34190275 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 212 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 25-308 |
| Cow position: | chr13:38013343-38013625 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 230 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 26-214 |
| Cow position: | chr13:19322177-19322372 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-245 |
| Cow position: | chr13:30306733-30306506 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 42, 98 |
| Conread position: | 26-245 |
| Cow position: | chr13:60967463-60967687 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 26-251 |
| Cow position: | chr13:5229656-5229890 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 26-252 |
| Cow position: | chr13:36346672-36346897 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 159 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 155, 27 |
| Conread position: | 26-255 |
| Cow position: | chr13:42088164-42088396 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-271 |
| Cow position: | chr13:45072628-45072388 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 190 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-272 |
| Cow position: | chr13:19638757-19638504 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 182 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-273 |
| Cow position: | chr13:34994272-34994023 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-274 |
| Cow position: | chr13:47313376-47313636 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 188 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-276 |
| Cow position: | chr13:17456419-17456160 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 25, 0 |
| Conread position: | 26-284 |
| Cow position: | chr13:12572125-12572389 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 194 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-296 |
| Cow position: | chr13:33907443-33907719 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 43, 209 |
| Conread position: | 26-296 |
| Cow position: | chr13:38612533-38612261 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-306 |
| Cow position: | chr13:11795385-11795665 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 26-307 |
| Cow position: | chr13:18329806-18330094 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 42, 257 |
| Conread position: | 26-307 |
| Cow position: | chr13:21135051-21134763 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 33, 177 |
| Conread position: | 26-308 |
| Cow position: | chr13:3314942-3314653 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 258 |
| Conread position: | 26-308 |
| Cow position: | chr13:4487172-4486883 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:4944709-4944420 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-308 |
| Cow position: | chr13:6343201-6342912 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 57, 24 |
| Conread position: | 26-308 |
| Cow position: | chr13:6664809-6665098 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr13:9301476-9301194 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-27 |
| Alignm gaps (pig, cow): | 42, 186 |
| Conread position: | 26-308 |
| Cow position: | chr13:9537556-9537271 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 56, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:12618435-12618151 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:13312908-13312619 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 58, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:16248626-16248911 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 155, 32 |
| Conread position: | 26-308 |
| Cow position: | chr13:16344834-16345116 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 8 |
| Conread position: | 26-308 |
| Cow position: | chr13:21107808-21108074 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 26-308 |
| Cow position: | chr13:21905593-21905882 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-308 |
| Cow position: | chr13:22085088-22084800 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:26822817-26823101 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:28413977-28414259 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 70, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:30241887-30241595 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:30468799-30469088 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr13:32733868-32734157 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr13:32921994-32922284 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 258 |
| Conread position: | 26-308 |
| Cow position: | chr13:35760860-35760572 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 61, 256 |
| Conread position: | 26-308 |
| Cow position: | chr13:44323650-44323931 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:47189330-47189047 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 152, 26 |
| Conread position: | 26-308 |
| Cow position: | chr13:47357284-47357564 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 155, 24 |
| Conread position: | 28-243 |
| Cow position: | chr13:50680836-50680621 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 146, 24 |
| Conread position: | 28-244 |
| Cow position: | chr13:41807424-41807648 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 167 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 23 |
| Conread position: | 28-258 |
| Cow position: | chr13:15921143-15921382 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 0 |
| Conread position: | 28-258 |
| Cow position: | chr13:34038242-34038480 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 28-288 |
| Cow position: | chr13:3015498-3015225 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 79-308 |
| Cow position: | chr13:15257151-15256918 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 185 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 95, 7 |
| Conread position: | 86-308 |
| Cow position: | chr13:17252697-17252923 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 162 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 60, 41 |
| Conread position: | 87-289 |
| Cow position: | chr13:34928410-34928208 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 79, 146 |
| Conread position: | 87-307 |
| Cow position: | chr13:34298836-34298611 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 87, 195 |
| Conread position: | 90-308 |
| Cow position: | chr13:19393871-19394094 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 81, 193 |
| Conread position: | 90-308 |
| Cow position: | chr13:47574318-47574536 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 18, 175 |
| Conread position: | 90-308 |
| Cow position: | chr13:48945692-48945908 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 166 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 186, 0 |
| Conread position: | 95-258 |
| Cow position: | chr13:3651038-3651208 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 86, 0 |
| Conread position: | 99-308 |
| Cow position: | chr13:30652041-30652255 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 82, 183 |
| Conread position: | 108-308 |
| Cow position: | chr13:7609382-7609175 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 123 |
| Conread position: | 108-308 |
| Cow position: | chr13:46736952-46737143 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 73, 57 |
| Conread position: | 113-306 |
| Cow position: | chr13:11822698-11822898 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 148 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 61, 173 |
| Conread position: | 127-308 |
| Cow position: | chr13:3001135-3001321 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 54, 156 |
Show alignments to all cow chromosomes.