Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 20-308 |
| Cow position: | chr17:254504-254213 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 50, 32 |
| Conread position: | 23-247 |
| Cow position: | chr17:33934407-33934647 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 175 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-274 |
| Cow position: | chr17:23884402-23884648 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 46, 21 |
| Conread position: | 24-245 |
| Cow position: | chr17:3197223-3197453 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 25-226 |
| Cow position: | chr17:24293514-24293309 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 146 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 156, 27 |
| Conread position: | 25-241 |
| Cow position: | chr17:1883649-1883425 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 26-207 |
| Cow position: | chr17:923026-922837 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 26-219 |
| Cow position: | chr17:997771-997973 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 141 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-233 |
| Cow position: | chr17:20272158-20272374 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 153 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 26-241 |
| Cow position: | chr17:29079752-29079547 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 155 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 22, 0 |
| Conread position: | 26-245 |
| Cow position: | chr17:148313-148090 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-252 |
| Cow position: | chr17:21666404-21666169 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 161 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-253 |
| Cow position: | chr17:22774058-22774294 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-258 |
| Cow position: | chr17:979778-980021 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 49, 26 |
| Conread position: | 26-258 |
| Cow position: | chr17:13725667-13725428 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 87 |
| Conread position: | 26-272 |
| Cow position: | chr17:16903984-16903729 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-276 |
| Cow position: | chr17:36790471-36790211 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-296 |
| Cow position: | chr17:1568817-1569092 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-296 |
| Cow position: | chr17:14006815-14006554 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 26-307 |
| Cow position: | chr17:29213030-29212748 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-307 |
| Cow position: | chr17:38629530-38629273 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 26-308 |
| Cow position: | chr17:731093-731376 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 186 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:4635385-4635659 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 26-308 |
| Cow position: | chr17:6263259-6262972 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 230 |
| Conread position: | 26-308 |
| Cow position: | chr17:14243237-14242942 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 202 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 34, 150 |
| Conread position: | 26-308 |
| Cow position: | chr17:14249704-14249992 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 26-308 |
| Cow position: | chr17:15854138-15853851 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 61, 27 |
| Conread position: | 26-308 |
| Cow position: | chr17:16118066-16118345 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:16854696-16854982 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 155, 32 |
| Conread position: | 26-308 |
| Cow position: | chr17:18099669-18099958 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:18591806-18591538 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:20078274-20078555 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 85 |
| Conread position: | 26-308 |
| Cow position: | chr17:22563550-22563261 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:25739701-25739412 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 42, 257 |
| Conread position: | 26-308 |
| Cow position: | chr17:29471835-29471553 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr17:44482256-44481960 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 36, 24 |
| Conread position: | 28-201 |
| Cow position: | chr17:3305988-3305816 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 124 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 28-308 |
| Cow position: | chr17:11083732-11084019 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 255 |
| Conread position: | 28-308 |
| Cow position: | chr17:20091223-20091494 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 211 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 28-308 |
| Cow position: | chr17:29041502-29041785 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 56, 24 |
| Conread position: | 29-308 |
| Cow position: | chr17:2839417-2839139 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 58, 23 |
| Conread position: | 31-249 |
| Cow position: | chr17:25567596-25567372 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 31-308 |
| Cow position: | chr17:20215479-20215199 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 38, 7 |
| Conread position: | 49-308 |
| Cow position: | chr17:2079017-2078757 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 19, 31 |
| Conread position: | 53-308 |
| Cow position: | chr17:23337674-23337933 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 30, 19 |
| Conread position: | 86-217 |
| Cow position: | chr17:34000031-34000160 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 99 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 99, 0 |
| Conread position: | 86-255 |
| Cow position: | chr17:36747186-36747360 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 138 |
| Conread position: | 86-296 |
| Cow position: | chr17:42313227-42313012 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 95, 194 |
| Conread position: | 86-305 |
| Cow position: | chr17:27978446-27978224 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 164 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 56, 41 |
| Conread position: | 88-308 |
| Cow position: | chr17:21304630-21304405 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 73, 195 |
| Conread position: | 88-308 |
| Cow position: | chr17:29083509-29083293 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 165 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 49, 42 |
| Conread position: | 88-308 |
| Cow position: | chr17:29950553-29950328 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 93, 193 |
| Conread position: | 90-258 |
| Cow position: | chr17:2698892-2698719 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 88, 50 |
| Conread position: | 90-261 |
| Cow position: | chr17:20083090-20083269 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 129 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 81, 0 |
| Conread position: | 90-305 |
| Cow position: | chr17:40802086-40801871 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 166 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 91, 43 |
| Conread position: | 90-308 |
| Cow position: | chr17:138941-138724 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 120 |
| Conread position: | 90-308 |
| Cow position: | chr17:2583726-2583508 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 91, 186 |
| Conread position: | 90-308 |
| Cow position: | chr17:29156712-29156489 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 193 |
| Conread position: | 95-308 |
| Cow position: | chr17:15335105-15335323 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 86, 53 |
| Conread position: | 104-301 |
| Cow position: | chr17:12290161-12290364 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 144 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 59, 178 |
| Conread position: | 107-308 |
| Cow position: | chr17:5043270-5043476 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 67, 137 |
| Conread position: | 120-307 |
| Cow position: | chr17:11032458-11032268 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 134 |
Show alignments to all cow chromosomes.