Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 20-308 |
| Cow position: | chr18:23659257-23659555 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 213 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 63, 32 |
| Conread position: | 23-308 |
| Cow position: | chr18:36122227-36122523 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-308 |
| Cow position: | chr18:36770909-36771193 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 21, 31 |
| Conread position: | 25-307 |
| Cow position: | chr18:2853159-2853447 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 44, 28 |
| Conread position: | 26-183 |
| Cow position: | chr18:51713435-51713594 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 26-211 |
| Cow position: | chr18:9365171-9364984 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 144 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-214 |
| Cow position: | chr18:12241440-12241252 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 140 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 26-226 |
| Cow position: | chr18:31563848-31564052 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-247 |
| Cow position: | chr18:36133382-36133170 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 26-252 |
| Cow position: | chr18:36477412-36477174 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 9 |
| Conread position: | 26-255 |
| Cow position: | chr18:26845700-26845470 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 163 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 154, 31 |
| Conread position: | 26-259 |
| Cow position: | chr18:46869769-46869537 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 152, 50 |
| Conread position: | 26-272 |
| Cow position: | chr18:3149106-3149365 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 119, 26 |
| Conread position: | 26-272 |
| Cow position: | chr18:16641076-16640821 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-274 |
| Cow position: | chr18:40342219-40342478 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 43, 104 |
| Conread position: | 26-275 |
| Cow position: | chr18:13508443-13508698 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 201 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 26-277 |
| Cow position: | chr18:55001485-55001745 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 180 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 26-292 |
| Cow position: | chr18:17670344-17670615 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 21 |
| Conread position: | 26-296 |
| Cow position: | chr18:26305901-26305624 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 36, 192 |
| Conread position: | 26-296 |
| Cow position: | chr18:39002510-39002773 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 154, 8 |
| Conread position: | 26-307 |
| Cow position: | chr18:35013023-35013308 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 70, 18 |
| Conread position: | 26-308 |
| Cow position: | chr18:5536601-5536311 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:6103787-6104062 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 214 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:6733342-6733626 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 26-308 |
| Cow position: | chr18:14127659-14127947 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 131 |
| Conread position: | 26-308 |
| Cow position: | chr18:16172985-16173274 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr18:26844471-26844744 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 57, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:27194131-27193848 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:27990385-27990096 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr18:29240945-29240660 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 54, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:29862980-29863265 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:30844278-30844565 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr18:35057642-35057369 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr18:36208761-36209035 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 155, 24 |
| Conread position: | 26-308 |
| Cow position: | chr18:37692657-37692948 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-308 |
| Cow position: | chr18:40484628-40484339 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 7, 113 |
| Conread position: | 26-308 |
| Cow position: | chr18:41837462-41837751 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 35, 257 |
| Conread position: | 26-308 |
| Cow position: | chr18:43430629-43430345 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 140, 251 |
| Conread position: | 26-308 |
| Cow position: | chr18:44261696-44261407 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 219 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 26-308 |
| Cow position: | chr18:52656422-52656134 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr18:54033336-54033047 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 27-269 |
| Cow position: | chr18:51485214-51484964 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 212 |
| Conread position: | 27-308 |
| Cow position: | chr18:14419604-14419316 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 42, 256 |
| Conread position: | 28-308 |
| Cow position: | chr18:16025029-16025319 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 22 |
| Conread position: | 28-308 |
| Cow position: | chr18:36512253-36511973 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 30-294 |
| Cow position: | chr18:28929821-28930084 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 131, 22 |
| Conread position: | 34-302 |
| Cow position: | chr18:29059197-29059475 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 40-308 |
| Cow position: | chr18:36776891-36776615 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 29, 244 |
| Conread position: | 54-262 |
| Cow position: | chr18:43129679-43129471 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 119, 15 |
| Conread position: | 86-290 |
| Cow position: | chr18:23716096-23716306 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 10, 170 |
| Conread position: | 86-297 |
| Cow position: | chr18:28084613-28084397 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 73, 152 |
| Conread position: | 87-307 |
| Cow position: | chr18:39494351-39494129 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 69, 157 |
| Conread position: | 88-294 |
| Cow position: | chr18:45905310-45905520 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 81, 139 |
| Conread position: | 90-308 |
| Cow position: | chr18:1022460-1022683 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 91, 190 |
| Conread position: | 90-308 |
| Cow position: | chr18:38157980-38158203 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 91, 191 |
| Conread position: | 95-245 |
| Cow position: | chr18:21199546-21199704 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 118 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 95-306 |
| Cow position: | chr18:15172404-15172192 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 187 |
| Conread position: | 107-308 |
| Cow position: | chr18:10890293-10890097 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 77, 58 |
| Conread position: | 108-308 |
| Cow position: | chr18:21304046-21303840 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 156 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 25, 19 |
| Conread position: | 116-308 |
| Cow position: | chr18:33406844-33406647 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 65, 167 |
| Conread position: | 124-297 |
| Cow position: | chr18:36912861-36913039 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 134 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 56, 159 |
Show alignments to all cow chromosomes.