Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 16-308 |
| Cow position: | chr19:27612847-27613158 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 53, 36 |
| Conread position: | 23-290 |
| Cow position: | chr19:9099249-9098979 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 47, 12 |
| Conread position: | 24-308 |
| Cow position: | chr19:29628070-29628348 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 154, 29 |
| Conread position: | 24-308 |
| Cow position: | chr19:50561699-50561409 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 25-308 |
| Cow position: | chr19:743080-743362 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 28 |
| Conread position: | 26-186 |
| Cow position: | chr19:29365163-29365007 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 118 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 26-194 |
| Cow position: | chr19:15068685-15068848 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 24, 0 |
| Conread position: | 26-255 |
| Cow position: | chr19:5044066-5044302 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-258 |
| Cow position: | chr19:28794697-28794938 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 173 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-258 |
| Cow position: | chr19:44216216-44216456 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 31, 214 |
| Conread position: | 26-258 |
| Cow position: | chr19:50833273-50833509 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 170 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-272 |
| Cow position: | chr19:12776875-12776635 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-289 |
| Cow position: | chr19:33625202-33624937 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 190 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 132, 31 |
| Conread position: | 26-296 |
| Cow position: | chr19:36189332-36189054 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-302 |
| Cow position: | chr19:30473511-30473787 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-304 |
| Cow position: | chr19:28575768-28576049 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 26-306 |
| Cow position: | chr19:34985716-34985433 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 11, 28 |
| Conread position: | 26-308 |
| Cow position: | chr19:435702-435993 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 35, 259 |
| Conread position: | 26-308 |
| Cow position: | chr19:541991-542275 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:930453-930164 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:2019131-2019418 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 26-308 |
| Cow position: | chr19:2269667-2269956 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 200 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr19:4447846-4447559 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 96, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:5733129-5732840 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 24, 90 |
| Conread position: | 26-308 |
| Cow position: | chr19:7472681-7472405 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 76 |
| Conread position: | 26-308 |
| Cow position: | chr19:7491718-7491440 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 154, 27 |
| Conread position: | 26-308 |
| Cow position: | chr19:12652509-12652220 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 35, 257 |
| Conread position: | 26-308 |
| Cow position: | chr19:14158042-14157753 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 26-308 |
| Cow position: | chr19:20671966-20672250 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 89, 6 |
| Conread position: | 26-308 |
| Cow position: | chr19:29367162-29366873 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:29624670-29624381 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:30237341-30237055 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 43, 22 |
| Conread position: | 26-308 |
| Cow position: | chr19:33877050-33876761 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr19:33945200-33944911 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 112 |
| Conread position: | 26-308 |
| Cow position: | chr19:34905691-34905982 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:35381448-35381729 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 202 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 26-308 |
| Cow position: | chr19:39181900-39182195 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 263 |
| Conread position: | 26-308 |
| Cow position: | chr19:39394835-39394546 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr19:39697111-39696829 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:40790724-40791011 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 26-308 |
| Cow position: | chr19:44839557-44839824 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:46821486-46821198 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr19:48534355-48534075 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 27-296 |
| Cow position: | chr19:15797053-15796781 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 190 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 154, 25 |
| Conread position: | 27-308 |
| Cow position: | chr19:12209297-12209588 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 27-308 |
| Cow position: | chr19:40848856-40849144 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 28-255 |
| Cow position: | chr19:19501059-19501295 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 28-297 |
| Cow position: | chr19:4599642-4599372 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 28-308 |
| Cow position: | chr19:255492-255780 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 28-308 |
| Cow position: | chr19:36351900-36351614 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 24 |
| Conread position: | 28-308 |
| Cow position: | chr19:40883898-40884179 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 194 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 152, 24 |
| Conread position: | 30-308 |
| Cow position: | chr19:6556247-6555966 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 110, 17 |
| Conread position: | 44-268 |
| Cow position: | chr19:39077055-39076829 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 25, 8 |
| Conread position: | 51-308 |
| Cow position: | chr19:35982368-35982116 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 181 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 112, 18 |
| Conread position: | 52-306 |
| Cow position: | chr19:52465680-52465933 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 18, 197 |
| Conread position: | 80-308 |
| Cow position: | chr19:1663645-1663417 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 174 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 101, 198 |
| Conread position: | 80-308 |
| Cow position: | chr19:9704615-9704842 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 106, 47 |
| Conread position: | 90-246 |
| Cow position: | chr19:799934-799772 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 86, 125 |
| Conread position: | 90-274 |
| Cow position: | chr19:30717458-30717268 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 21, 164 |
| Conread position: | 90-306 |
| Cow position: | chr19:14156540-14156759 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 174 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 91, 37 |
| Conread position: | 90-308 |
| Cow position: | chr19:15720319-15720528 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 91, 155 |
| Conread position: | 91-226 |
| Cow position: | chr19:42725578-42725444 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 105 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 89, 118 |
| Conread position: | 91-272 |
| Cow position: | chr19:21337339-21337526 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 135 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 90, 28 |
| Conread position: | 91-308 |
| Cow position: | chr19:42867032-42866810 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 89, 192 |
| Conread position: | 92-308 |
| Cow position: | chr19:7065244-7065023 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 89, 192 |
Show alignments to all cow chromosomes.