Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 20-308 |
| Cow position: | chr20:28725362-28725067 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 48, 32 |
| Conread position: | 21-253 |
| Cow position: | chr20:7225769-7225530 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 177 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 47, 5 |
| Conread position: | 23-183 |
| Cow position: | chr20:9987742-9987587 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 23-308 |
| Cow position: | chr20:11454001-11454295 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 23-308 |
| Cow position: | chr20:16526898-16526605 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-308 |
| Cow position: | chr20:33731345-33731062 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 79, 29 |
| Conread position: | 25-252 |
| Cow position: | chr20:9007238-9007473 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 25-272 |
| Cow position: | chr20:28560296-28560552 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 26-197 |
| Cow position: | chr20:12552965-12553134 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 122 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 125, 26 |
| Conread position: | 26-241 |
| Cow position: | chr20:17845308-17845089 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 155, 24 |
| Conread position: | 26-245 |
| Cow position: | chr20:39375568-39375793 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 26-247 |
| Cow position: | chr20:5077552-5077317 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 31, 0 |
| Conread position: | 26-252 |
| Cow position: | chr20:13619191-13619426 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-254 |
| Cow position: | chr20:12826882-12827117 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-258 |
| Cow position: | chr20:15527342-15527101 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 166 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-258 |
| Cow position: | chr20:35128561-35128319 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 168 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-260 |
| Cow position: | chr20:21015394-21015641 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 177 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-270 |
| Cow position: | chr20:28165432-28165189 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 170 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 157, 26 |
| Conread position: | 26-274 |
| Cow position: | chr20:40423734-40423987 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-275 |
| Cow position: | chr20:29843888-29843647 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 188 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 26-289 |
| Cow position: | chr20:9511221-9511482 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 26-294 |
| Cow position: | chr20:9339611-9339336 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-297 |
| Cow position: | chr20:12489551-12489826 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 47, 111 |
| Conread position: | 26-303 |
| Cow position: | chr20:15235208-15234928 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-303 |
| Cow position: | chr20:35036783-35037067 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-306 |
| Cow position: | chr20:9700915-9700633 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 26-306 |
| Cow position: | chr20:14512288-14512005 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 77, 26 |
| Conread position: | 26-307 |
| Cow position: | chr20:12694906-12694612 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:3782104-3782396 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:5958548-5958837 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:6550401-6550690 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 259 |
| Conread position: | 26-308 |
| Cow position: | chr20:9997133-9996842 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr20:10921329-10921616 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 55, 211 |
| Conread position: | 26-308 |
| Cow position: | chr20:12434803-12435092 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr20:12567723-12568008 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 253 |
| Conread position: | 26-308 |
| Cow position: | chr20:14877655-14877368 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 208 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:15089776-15090064 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:15295614-15295326 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 129 |
| Conread position: | 26-308 |
| Cow position: | chr20:17657635-17657924 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:18321973-18322249 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 0 |
| Conread position: | 26-308 |
| Cow position: | chr20:20935542-20935823 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:22209218-22208929 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 47, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:22222012-22222297 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 155, 24 |
| Conread position: | 26-308 |
| Cow position: | chr20:23466053-23466341 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 103 |
| Conread position: | 26-308 |
| Cow position: | chr20:24903949-24904236 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 18, 91 |
| Conread position: | 26-308 |
| Cow position: | chr20:25658434-25658716 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:27877080-27876794 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:28294913-28294629 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:29370823-29371113 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:37271869-37271576 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-308 |
| Cow position: | chr20:38001074-38000796 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 194 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 43, 25 |
| Conread position: | 26-308 |
| Cow position: | chr20:40256249-40255971 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 154, 26 |
| Conread position: | 28-267 |
| Cow position: | chr20:27895860-27896102 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 112, 24 |
| Conread position: | 28-308 |
| Cow position: | chr20:5575863-5575594 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 24 |
| Conread position: | 28-308 |
| Cow position: | chr20:12333269-12332991 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 52, 24 |
| Conread position: | 35-308 |
| Cow position: | chr20:12155783-12156053 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 18 |
| Conread position: | 37-308 |
| Cow position: | chr20:21398403-21398124 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 38-308 |
| Cow position: | chr20:27993944-27994214 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 202 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 143, 23 |
| Conread position: | 41-308 |
| Cow position: | chr20:4205229-4204957 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 34, 52 |
| Conread position: | 49-308 |
| Cow position: | chr20:10838892-10839148 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 132, 87 |
| Conread position: | 55-295 |
| Cow position: | chr20:21768043-21768291 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 14, 118 |
| Conread position: | 62-308 |
| Cow position: | chr20:9707582-9707823 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 176 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 101, 30 |
| Conread position: | 64-308 |
| Cow position: | chr20:35843879-35844125 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 176, 116 |
| Conread position: | 86-301 |
| Cow position: | chr20:42254510-42254724 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 163 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 168 |
| Conread position: | 86-308 |
| Cow position: | chr20:6097135-6097357 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 95, 120 |
| Conread position: | 86-308 |
| Cow position: | chr20:27000030-26999802 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 173 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 95, 195 |
| Conread position: | 87-253 |
| Cow position: | chr20:20779251-20779424 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 129 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 94, 0 |
| Conread position: | 90-308 |
| Cow position: | chr20:6055200-6055416 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 91, 152 |
| Conread position: | 95-253 |
| Cow position: | chr20:21018842-21018678 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 119 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 115 |
| Conread position: | 95-308 |
| Cow position: | chr20:13955150-13954929 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 159 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 85, 206 |
| Conread position: | 96-308 |
| Cow position: | chr20:24507555-24507771 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 67, 139 |
Show alignments to all cow chromosomes.