Cow genome map

Conread name: End1-UMC-pd3end2-002-d02

Conread position: 14-308
Cow position: chr22:43045168-43045468 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 11, 87

Conread position: 17-308
Cow position: chr22:29553643-29553938 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 207
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 52, 11

Conread position: 20-256
Cow position: chr22:11806079-11806319 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 173
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 30, 52

Conread position: 20-308
Cow position: chr22:25340687-25340398 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 215
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 160, 32

Conread position: 23-244
Cow position: chr22:36594673-36594899 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 167
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 45, 30

Conread position: 23-296
Cow position: chr22:1591573-1591292 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 200
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 45, 106

Conread position: 23-308
Cow position: chr22:5929373-5929649 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 214
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 73, 5

Conread position: 23-308
Cow position: chr22:13017470-13017755 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 158, 29

Conread position: 23-308
Cow position: chr22:19140169-19140460 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 204
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 46, 260

Conread position: 23-308
Cow position: chr22:36555610-36555903 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 46, 27

Conread position: 23-308
Cow position: chr22:36572001-36572295 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 46, 34

Conread position: 23-308
Cow position: chr22:37323799-37323514 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 46, 5

Conread position: 24-244
Cow position: chr22:30092326-30092099 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 162
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 45, 28

Conread position: 24-261
Cow position: chr22:22862241-22862475 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 168
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 150, 54

Conread position: 24-308
Cow position: chr22:13721204-13721486 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 210
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 15, 29

Conread position: 24-308
Cow position: chr22:22285532-22285243 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 204
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 10, 29

Conread position: 24-308
Cow position: chr22:37032342-37032630 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 8, 30

Conread position: 25-308
Cow position: chr22:32220976-32220705 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 201
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 82, 25

Conread position: 26-194
Cow position: chr22:13768804-13768641 (view UCSC Genome Browser custom track)
Alignm length: 169
Alignm identity: 122
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 18, 0

Conread position: 26-239
Cow position: chr22:3941591-3941369 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 157
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 26-241
Cow position: chr22:6924566-6924341 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 155
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 63, 27

Conread position: 26-241
Cow position: chr22:39695627-39695400 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 169
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 42, 27

Conread position: 26-245
Cow position: chr22:5338291-5338525 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 90, 22

Conread position: 26-245
Cow position: chr22:40589947-40589709 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 173
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 44, 26

Conread position: 26-248
Cow position: chr22:5624106-5624340 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 162
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 5, 0

Conread position: 26-255
Cow position: chr22:2531563-2531806 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 36, 26

Conread position: 26-258
Cow position: chr22:799399-799155 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 172
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 42, 0

Conread position: 26-272
Cow position: chr22:18807700-18807955 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 179
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 43, 26

Conread position: 26-272
Cow position: chr22:18811380-18811636 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 178
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 63, 26

Conread position: 26-272
Cow position: chr22:27386022-27386277 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 181
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 26

Conread position: 26-301
Cow position: chr22:2560940-2561209 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 190
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 155, 26

Conread position: 26-303
Cow position: chr22:34171984-34171700 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 195
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 44, 257

Conread position: 26-304
Cow position: chr22:10161265-10160977 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 44, 262

Conread position: 26-304
Cow position: chr22:41271677-41271955 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 155, 26

Conread position: 26-305
Cow position: chr22:33951427-33951711 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 61, 27

Conread position: 26-307
Cow position: chr22:5015611-5015333 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 150, 26

Conread position: 26-307
Cow position: chr22:6493410-6493118 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 263

Conread position: 26-308
Cow position: chr22:1517507-1517797 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr22:1521939-1522229 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 197
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr22:3065269-3065557 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 48, 26

Conread position: 26-308
Cow position: chr22:3433429-3433718 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:5315775-5315485 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 198
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:6340186-6339898 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 200
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:8417785-8417496 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 36, 26

Conread position: 26-308
Cow position: chr22:9269733-9269440 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 201
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:10314158-10313872 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr22:12868912-12869211 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 212
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 54, 26

Conread position: 26-308
Cow position: chr22:15308428-15308718 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr22:17324968-17325257 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 43, 261

Conread position: 26-308
Cow position: chr22:19048247-19048526 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 70, 26

Conread position: 26-308
Cow position: chr22:19822725-19822436 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 196
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr22:22048667-22048955 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 43, 18

Conread position: 26-308
Cow position: chr22:28785645-28785364 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 197
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 43, 237

Conread position: 26-308
Cow position: chr22:29397614-29397329 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 26, 55

Conread position: 26-308
Cow position: chr22:29464423-29464136 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:29955670-29955946 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 142, 26

Conread position: 26-308
Cow position: chr22:30963424-30963146 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 155, 26

Conread position: 26-308
Cow position: chr22:31316077-31315788 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 202
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:31331338-31331627 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 199
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 43, 257

Conread position: 26-308
Cow position: chr22:32019029-32019314 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 203
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 44, 27

Conread position: 26-308
Cow position: chr22:32210146-32209856 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:32894441-32894153 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:33093871-33093583 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 206
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr22:34901398-34901110 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 16, 27

Conread position: 26-308
Cow position: chr22:35755159-35755447 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 12

Conread position: 26-308
Cow position: chr22:35909951-35910243 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 199
Alignm E-value: 9e-29
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:35934436-35934723 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 196
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 56, 26

Conread position: 26-308
Cow position: chr22:36503174-36503456 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 62, 27

Conread position: 26-308
Cow position: chr22:38439842-38440125 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 43, 16

Conread position: 26-308
Cow position: chr22:39465007-39465296 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 197
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 43, 258

Conread position: 26-308
Cow position: chr22:40373919-40373635 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:41407939-41408217 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 192
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:41846035-41846324 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 207
Alignm E-value: 8.99999e-40
Alignm gaps (pig, cow): 43, 26

Conread position: 26-308
Cow position: chr22:41972021-41972295 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 197
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 44, 26

Conread position: 26-308
Cow position: chr22:44924799-44925081 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 43, 24

Conread position: 27-301
Cow position: chr22:3270299-3270579 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 25

Conread position: 27-306
Cow position: chr22:42234303-42234026 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 35, 25

Conread position: 27-308
Cow position: chr22:45013448-45013728 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 200
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 42, 25

Conread position: 28-183
Cow position: chr22:22160043-22159891 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 114
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 24

Conread position: 28-307
Cow position: chr22:21592955-21592669 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 201
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 40, 255

Conread position: 28-308
Cow position: chr22:18603279-18603566 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 33, 255

Conread position: 30-308
Cow position: chr22:1310411-1310699 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 190
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 13, 261

Conread position: 39-272
Cow position: chr22:11371382-11371619 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 30, 13

Conread position: 44-272
Cow position: chr22:3012229-3011995 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 166
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 43, 8

Conread position: 51-308
Cow position: chr22:36188562-36188297 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 183
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 18, 233

Conread position: 61-250
Cow position: chr22:25906020-25905826 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 139
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 120, 25

Conread position: 62-308
Cow position: chr22:12625063-12625314 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 88, 223

Conread position: 63-308
Cow position: chr22:21935374-21935625 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 176
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 19, 153

Conread position: 64-274
Cow position: chr22:29062281-29062066 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 148
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 95, 23

Conread position: 64-287
Cow position: chr22:6722076-6722304 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 168
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 110, 219

Conread position: 65-308
Cow position: chr22:13209874-13209627 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 174
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 24, 63

Conread position: 70-308
Cow position: chr22:14510029-14510272 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 180
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 111, 213

Conread position: 86-241
Cow position: chr22:5331311-5331468 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 125
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 94, 0

Conread position: 86-272
Cow position: chr22:41470158-41470351 (view UCSC Genome Browser custom track)
Alignm length: 194
Alignm identity: 134
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 87, 0

Conread position: 86-307
Cow position: chr22:11746647-11746865 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 163
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 72, 24

Conread position: 87-304
Cow position: chr22:26338776-26338566 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 159
Alignm E-value: 4e-33
Alignm gaps (pig, cow): 23, 0

Conread position: 87-308
Cow position: chr22:9371828-9371603 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 164
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 93, 167

Conread position: 87-308
Cow position: chr22:11988234-11988461 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 168
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 76, 195

Conread position: 88-268
Cow position: chr22:17853681-17853869 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 137
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 24, 0

Conread position: 88-308
Cow position: chr22:43789197-43788972 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 170
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 71, 195

Conread position: 90-270
Cow position: chr22:36357524-36357338 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 71, 147

Conread position: 90-308
Cow position: chr22:31598777-31598549 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 171
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 80, 199

Conread position: 90-308
Cow position: chr22:45845369-45845147 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 171
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 82, 34

Conread position: 91-276
Cow position: chr22:47462699-47462511 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 146
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 91, 0

Conread position: 99-308
Cow position: chr22:26104680-26104894 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 153
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 41, 28

Show alignments to all cow chromosomes.