Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 17-303 |
| Cow position: | chr23:25554130-25553835 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 55, 35 |
| Conread position: | 22-307 |
| Cow position: | chr23:5870877-5871157 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 65, 30 |
| Conread position: | 24-272 |
| Cow position: | chr23:39389598-39389341 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 174 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 45, 0 |
| Conread position: | 25-288 |
| Cow position: | chr23:11405157-11405425 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 192 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 44, 27 |
| Conread position: | 25-308 |
| Cow position: | chr23:1959655-1959365 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 44, 258 |
| Conread position: | 26-183 |
| Cow position: | chr23:5539609-5539767 (view UCSC Genome Browser custom track) |
| Alignm length: | 160 |
| Alignm identity: | 115 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-214 |
| Cow position: | chr23:14738427-14738229 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 26-246 |
| Cow position: | chr23:1398711-1398928 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 166 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-246 |
| Cow position: | chr23:2791247-2791476 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 162 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 44, 12 |
| Conread position: | 26-253 |
| Cow position: | chr23:17846516-17846283 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 157 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 43, 13 |
| Conread position: | 26-253 |
| Cow position: | chr23:36688485-36688718 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 57, 31 |
| Conread position: | 26-255 |
| Cow position: | chr23:29446423-29446663 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 169 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 42, 26 |
| Conread position: | 26-264 |
| Cow position: | chr23:14839662-14839908 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 5, 27 |
| Conread position: | 26-266 |
| Cow position: | chr23:344942-345190 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-266 |
| Cow position: | chr23:29471784-29472030 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-303 |
| Cow position: | chr23:3877622-3877900 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 55, 95 |
| Conread position: | 26-303 |
| Cow position: | chr23:6173496-6173777 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 209 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 44 |
| Conread position: | 26-304 |
| Cow position: | chr23:31833465-31833757 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 43, 27 |
| Conread position: | 26-306 |
| Cow position: | chr23:8290981-8290702 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 42, 207 |
| Conread position: | 26-306 |
| Cow position: | chr23:30622973-30623260 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 63, 26 |
| Conread position: | 26-307 |
| Cow position: | chr23:416448-416166 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-307 |
| Cow position: | chr23:14970427-14970712 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-307 |
| Cow position: | chr23:25357874-25357585 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 204 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 38, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:2023561-2023846 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:2472774-2473064 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:4517057-4516775 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 26-308 |
| Cow position: | chr23:4892223-4891934 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 196 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 44, 112 |
| Conread position: | 26-308 |
| Cow position: | chr23:5624051-5624334 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 145 |
| Conread position: | 26-308 |
| Cow position: | chr23:11078806-11078519 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:11376790-11377079 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:11782313-11782024 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:12864215-12863939 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 159, 24 |
| Conread position: | 26-308 |
| Cow position: | chr23:12978272-12977996 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 155, 21 |
| Conread position: | 26-308 |
| Cow position: | chr23:14265867-14265585 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 61, 24 |
| Conread position: | 26-308 |
| Cow position: | chr23:15180483-15180197 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 43, 18 |
| Conread position: | 26-308 |
| Cow position: | chr23:15215323-15215599 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:15529114-15528825 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:20152693-20152982 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 43, 255 |
| Conread position: | 26-308 |
| Cow position: | chr23:24098655-24098366 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr23:27402661-27402375 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:28915855-28915571 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:30634070-30634356 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 43, 65 |
| Conread position: | 26-308 |
| Cow position: | chr23:36027725-36028014 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr23:37198983-37199272 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 26-308 |
| Cow position: | chr23:40890301-40890013 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 209 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 27-307 |
| Cow position: | chr23:1321870-1322155 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 28-308 |
| Cow position: | chr23:14959432-14959713 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 251 |
| Conread position: | 28-308 |
| Cow position: | chr23:16495751-16496037 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 40, 228 |
| Conread position: | 28-308 |
| Cow position: | chr23:16999960-16999678 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 7 |
| Conread position: | 28-308 |
| Cow position: | chr23:17404135-17403852 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 153, 24 |
| Conread position: | 30-308 |
| Cow position: | chr23:26828772-26828491 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 38, 222 |
| Conread position: | 37-308 |
| Cow position: | chr23:40825315-40825036 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 192 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 32, 16 |
| Conread position: | 50-241 |
| Cow position: | chr23:8100740-8100548 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 138 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 130, 20 |
| Conread position: | 69-306 |
| Cow position: | chr23:1325834-1326075 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 112, 14 |
| Conread position: | 86-295 |
| Cow position: | chr23:38584383-38584167 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-20 |
| Alignm gaps (pig, cow): | 72, 199 |
| Conread position: | 86-308 |
| Cow position: | chr23:20541433-20541214 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 54, 41 |
| Conread position: | 87-272 |
| Cow position: | chr23:30243952-30243774 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 89, 0 |
| Conread position: | 90-307 |
| Cow position: | chr23:6593475-6593686 (view UCSC Genome Browser custom track) |
| Alignm length: | 219 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 117, 12 |
| Conread position: | 90-308 |
| Cow position: | chr23:40553661-40553884 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 158 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 91, 191 |
| Conread position: | 91-308 |
| Cow position: | chr23:29625439-29625212 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 168 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 90, 124 |
| Conread position: | 100-308 |
| Cow position: | chr23:29459802-29460011 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 81, 183 |
| Conread position: | 104-308 |
| Cow position: | chr23:20389574-20389783 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 67, 113 |
Show alignments to all cow chromosomes.