Cow genome map
| Conread name: | End1-UMC-pd3end2-002-d02 |
| Conread position: | 17-272 |
| Cow position: | chr24:11940390-11940126 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 180 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 239 |
| Conread position: | 23-273 |
| Cow position: | chr24:15793395-15793653 (view UCSC Genome Browser custom track) |
| Alignm length: | 261 |
| Alignm identity: | 180 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 46, 29 |
| Conread position: | 23-276 |
| Cow position: | chr24:27762866-27762604 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 46, 11 |
| Conread position: | 23-306 |
| Cow position: | chr24:29064346-29064636 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 45, 30 |
| Conread position: | 23-308 |
| Cow position: | chr24:14760522-14760224 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 19, 266 |
| Conread position: | 23-308 |
| Cow position: | chr24:41006092-41005808 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 189 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 46, 80 |
| Conread position: | 25-271 |
| Cow position: | chr24:7404301-7404551 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 183 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 44, 25 |
| Conread position: | 25-303 |
| Cow position: | chr24:28689020-28688750 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 155, 27 |
| Conread position: | 25-308 |
| Cow position: | chr24:30893260-30893539 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 139, 25 |
| Conread position: | 25-308 |
| Cow position: | chr24:45009805-45009518 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 194 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 48, 28 |
| Conread position: | 26-210 |
| Cow position: | chr24:25543577-25543758 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-226 |
| Cow position: | chr24:31323557-31323362 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 46, 0 |
| Conread position: | 26-237 |
| Cow position: | chr24:6148896-6148675 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 156 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-248 |
| Cow position: | chr24:144734-144965 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 26-253 |
| Cow position: | chr24:19466639-19466866 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 155 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-255 |
| Cow position: | chr24:10243942-10244177 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-262 |
| Cow position: | chr24:6340323-6340078 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 171 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 8 |
| Conread position: | 26-262 |
| Cow position: | chr24:17752626-17752870 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 10, 27 |
| Conread position: | 26-263 |
| Cow position: | chr24:14745964-14745734 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-272 |
| Cow position: | chr24:11081160-11081415 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-272 |
| Cow position: | chr24:12447114-12446859 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 169 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-277 |
| Cow position: | chr24:25677326-25677071 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 192 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 148, 26 |
| Conread position: | 26-293 |
| Cow position: | chr24:32740309-32740578 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-294 |
| Cow position: | chr24:26846983-26847261 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 43, 31 |
| Conread position: | 26-296 |
| Cow position: | chr24:35067175-35067439 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 189 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 155, 26 |
| Conread position: | 26-304 |
| Cow position: | chr24:38814262-38813979 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-306 |
| Cow position: | chr24:12332087-12332374 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 43, 231 |
| Conread position: | 26-306 |
| Cow position: | chr24:17368309-17368589 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 212 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 55, 26 |
| Conread position: | 26-306 |
| Cow position: | chr24:30765941-30765654 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-307 |
| Cow position: | chr24:17566465-17566176 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 200 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 48, 26 |
| Conread position: | 26-307 |
| Cow position: | chr24:32853832-32853544 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-307 |
| Cow position: | chr24:36268186-36268473 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-307 |
| Cow position: | chr24:38588402-38588114 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 195 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:3794102-3793813 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr24:5862734-5863024 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 37, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:6035560-6035850 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 256 |
| Conread position: | 26-308 |
| Cow position: | chr24:6413098-6412809 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 35, 257 |
| Conread position: | 26-308 |
| Cow position: | chr24:8607949-8607660 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 254 |
| Conread position: | 26-308 |
| Cow position: | chr24:9071226-9071512 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 41, 27 |
| Conread position: | 26-308 |
| Cow position: | chr24:12347776-12348062 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-30 |
| Alignm gaps (pig, cow): | 34, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:13235885-13235596 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 43, 24 |
| Conread position: | 26-308 |
| Cow position: | chr24:18222859-18223150 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:18266873-18267155 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 201 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 40, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:20283592-20283881 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 202 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:22975428-22975139 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 26, 220 |
| Conread position: | 26-308 |
| Cow position: | chr24:25991841-25992117 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 196 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 66, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:29084044-29084335 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 44, 24 |
| Conread position: | 26-308 |
| Cow position: | chr24:30870349-30870638 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 43, 256 |
| Conread position: | 26-308 |
| Cow position: | chr24:31357205-31356927 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 217 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 61, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:31758672-31758957 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 213 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 44, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:34761129-34760838 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:35823585-35823874 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 198 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 43, 257 |
| Conread position: | 26-308 |
| Cow position: | chr24:36027895-36028184 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:39956490-39956772 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 194 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:40466793-40467082 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 43, 26 |
| Conread position: | 26-308 |
| Cow position: | chr24:41063077-41062784 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 217 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 41, 26 |
| Conread position: | 27-307 |
| Cow position: | chr24:9549881-9549596 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 202 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 42, 25 |
| Conread position: | 27-308 |
| Cow position: | chr24:45087142-45086854 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-34 |
| Alignm gaps (pig, cow): | 43, 23 |
| Conread position: | 28-305 |
| Cow position: | chr24:32823510-32823788 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 24 |
| Conread position: | 28-308 |
| Cow position: | chr24:29179979-29179697 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 24 |
| Conread position: | 29-227 |
| Cow position: | chr24:31370675-31370878 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 146, 23 |
| Conread position: | 33-273 |
| Cow position: | chr24:12119356-12119603 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 36, 19 |
| Conread position: | 34-306 |
| Cow position: | chr24:12991383-12991112 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 195 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 139, 18 |
| Conread position: | 37-308 |
| Cow position: | chr24:17544335-17544613 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 32, 245 |
| Conread position: | 40-222 |
| Cow position: | chr24:39681119-39680934 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 22, 97 |
| Conread position: | 51-307 |
| Cow position: | chr24:16267043-16266782 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 202 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 130, 29 |
| Conread position: | 61-261 |
| Cow position: | chr24:33053439-33053644 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 120, 25 |
| Conread position: | 64-272 |
| Cow position: | chr24:6542325-6542549 (view UCSC Genome Browser custom track) |
| Alignm length: | 225 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 10, 0 |
| Conread position: | 80-308 |
| Cow position: | chr24:28497571-28497804 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 170 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 101, 203 |
| Conread position: | 87-308 |
| Cow position: | chr24:39501041-39501260 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 94, 187 |
| Conread position: | 90-304 |
| Cow position: | chr24:15372326-15372110 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 83, 46 |
| Conread position: | 90-308 |
| Cow position: | chr24:41671412-41671189 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 41, 37 |
| Conread position: | 91-274 |
| Cow position: | chr24:45216877-45217066 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 138 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 81, 181 |
| Conread position: | 99-308 |
| Cow position: | chr24:6524541-6524328 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 82, 183 |
| Conread position: | 107-243 |
| Cow position: | chr24:31815791-31815656 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 58, 0 |
| Conread position: | 115-308 |
| Cow position: | chr24:25439734-25439532 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 55, 0 |
Show alignments to all cow chromosomes.